BAC Information

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BAC

Clone NameMSMg01-158D01
Chromosome8 (Build37)
Map Location 19,977,211 - 19,977,518
singlet/doubletsinglet
Overlap geneEG665822
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
Downstream gene6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158D01.T7 (MSMg01no158_d01.b1)MSMg01-158D01.TJ (MSMg01no158_d01.g1)
ACCAG358472AG358473
length733720
length of high quality
(start - end)
314 (46 - 359)286 (81 - 366)
definitionCHROMAT_FILE: MSMg01no158_d01.b1 PHD_FILE: MSMg01no158_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:41 2005CHROMAT_FILE: MSMg01no158_d01.g1 PHD_FILE: MSMg01no158_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAGAGTTTCAGTTGTAAAGAAAATGACTGATAAAGTGTCATTCA
TAGTATTAGAAGAACTATCTTGTTGCTGCTTCATAACTGTAAATCTGCTA
CTGCTATAAATCATAATGTAATATCTGATATGCAGGATAGCAGACCCCAA
GAGGATCACTACCCACAGGTTAAGAATCTAGGATTTTCAAGTGTCCACTA
GCTGACAGCAATGCCCACCAAATGACTGTCTCAACTACAGAGAAATGGAT
ACACGCCCGGAGAAGGGAACTGGACAAAGACCCCTATCATAGCTAGTTTC
AGTTGCCAAATTGTTTTTTGTTTGCACCCCCCTGAAAGGGGTAACCTTAA
CTAAAGAACTGCCCCTATCAGATCGGCCAGATGTCATGTCTGTGGAAGAA
ACATTTCTTAATTTCTACTTGGTGCGAGAGGGCTCAGACCACTGTAGCCA
GTGCCCATCTTGCCCACATCTCTCCTGGGCTGTATCCTACAGCTGTCGCA
TTCACCCACCTATAGCAAGCCAGCATATCTTTCCCTCCCTGGTCTTTGTT
TCCCCTCCCTGCCTCTGTGTTCCCCGCCTTGACGCCCTTGCCACAAGCTC
TCCTTTGCATGGTACCACTGTCGACCTCACCCCCCCAAATTACCCCTCTC
CCTTCTTCCTACCCTGTTTTTTTCTGACGCATT
NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTTATTATTTTTTTAT
TTGCTTTCTTAACTCTTACCTACTTATATATTAATTCATTTTTCATATTC
TTACTTCAAACAACAGCTTGTAGAGTTATTGTCTATGGTTTCATGGAGAT
CTTTGCTTTTAGTCTTTGGGTAAACTAAGGATAAATGTGGGATTTCATCT
AGACTACTTAAAATAGTAAAAACTCTAGTCTTCTTTCTTTCTCTCAGGGA
ACCAAGGCTAGTGACTAACAGTTGGAACCCATGAAACTAATCAATAAGGA
ACATGATGTCTCATAAGTCCTACGCACTCGCTGCAAAGAAACACCTTAAC
ACTGGGCTCAGTGATGCTGCGTAACATAGCCCAGCACTTCTTCCTTGCTC
TTTGTATTTACACTATAAATACTGCTTTATTCACTGAGTGTAAAAGCTAC
CATAAGATCCCTAGAGATGTAAGTAAGCATATTTTTACGAACATCATGTT
TAAATATACACAGGTCATGAATATTTCAATCCTGAATTTATCCTGTTTTT
CAGTAATTCAGGACGTGTGATTGTCCACTGAATCTTTGCACAAGTTTTGT
TCATCTTTCTAACTCCTCTGTTCACTCACTCAAAAAATTAATAGTACCTA
TTTAATGTGTTCAAAAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_d01.b1 MSMg01no158_d01.b1 CHROMAT_FILE:
MSMg01no158_d01.b1 PHD_FILE: MSMg01no158_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:41 2005
         (314 letters)



>mm_chr8_19977009_19977722
          Length = 714

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattcccagagtttcagttgtaaagaaaatgactgataaagtgtcattcatagtatt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattcccagagtttcagttgtaaagaaaatgactgataaagtgtcattcatagtatt 262

                                                                       
Query: 63  agaagaactatcttgttgctgcttcataactgtaaatctgctactgctataaatcataat 122
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agaagtactatcttgttgctgcttcataactgtaaatctgctactgctataaatcataat 322

                                                                       
Query: 123 gtaatatctgatatgcaggatagcagaccccaagaggatcactacccacaggttaagaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtaatatctgatatgcaggatagcagaccccaagaggatcactacccacaggttaagaat 382

                                                                       
Query: 183 ctaggattttcaagtgtccactagctgacagcaatgcccaccaaatgactgtctcaacta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 383 ctaggattttcaagtgtccactagctgacagcaatgcccaccaaatgactgcctcagcta 442

                                                                       
Query: 243 cagagaaatggatacacgcccggagaagggaactggacaaagacccctatcatagctagt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 443 cagagaaatggatacacgcccggagaagggaactggacaaagacccctatcatagctagc 502

                   
Query: 303 ttcagttg 310
           ||||||||
Sbjct: 503 ttcagttg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)