BAC Information

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BAC

Clone NameMSMg01-159F06
Chromosome8 (Build37)
Map Location 73,084,521 - 73,236,450
singlet/doubletdoublet
Overlap geneEll, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik
Upstream geneLOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8
Downstream geneLOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159F06.T7 (MSMg01no159_f06.b1)MSMg01-159F06.TJ (MSMg01no159_f06.g1)
ACCAG359297AG359298
length741727
length of high quality
(start - end)
258 (46 - 303)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no159_f06.b1 PHD_FILE: MSMg01no159_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:02 2005CHROMAT_FILE: MSMg01no159_f06.g1 PHD_FILE: MSMg01no159_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,084,521 - 73,084,774)(73,236,168 - 73,236,450)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGAGCTTGTGGCCACACCCCTCTCTAGAGACCCCCCCAAGTGTC
TCTGACTCGTGCACCAGAGACCAGCCTTTGTCTAGGATTGGGAAAGCAAG
TAGGTGTGTCTGTGCACAGATTATCTCTCTATGTGTGTGCATGTGCACCC
ATGTGTGGAGTGTGGGTGGGTAGGAGGGCCATGTGTGTTCTGATGCAGCT
TTGTGCCTGGAGTTCTTAAAACACTCTAGAGACAGGAAGAGCTATTCTTG
GAGAACCAGCCAGCAAGTCTTATTACCCAACTGTGCCTGGTGGCTAGGGG
TCAGATTTTACTAGTTCCCCCTCTCCCCCCCAGTGTCATTGTGTACCTCC
TTTCAACCCATGCTCCCCTAAAAAAAAAAAAAAAAATCACTGTTAGATGG
TCTTTTCTAACACTTGTGTCCATTGTGCCTGCTGATCATGATATACCACC
TTGTTATTACTAGTCTGTCTGTATATCATCAGTCAGACTTGTTATACTGT
CTGTTAGAGCTATATATTTTGTGTAATTCTGGCTTCTTATCTTCTGTTGT
AAACTTCCAGACCACTCCATACCTATCTGGTAATTTGTCTTATCCTCATA
TCTGTTATGTAATTAGCCCTCATTGATACTCGGCTTCTACTTTTGTCAGA
AATTCCATTTTCAATAATCCTATATTTTTGATCTATATTTT
CACTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCATGTCACCCTCCCTGCTACAT
TCCAGACCCTCTGAAGGTGGCAAGCTAGATGGAATGGAGGCGCTAGCGAA
GGGGCTGTTCTGCAAGGAGTTCTGAGAGGTACAGCTGTCCTGGCAGCGGA
CCCTGGGATAGCTCTTGGCTAACACAATCTGTGGGTGCTGTGGGATCTTG
GCCAGTAACTCATCCAGAAGGGACCTGTGATGGTCAGTGGCCTGGCTCAG
GGAATGGGGTGGGGCTGAGGACACTTGGGGGTGCTTCTCCTGTTTGAGGG
TAGACCTGTTTTTGTCTTCCCCCGCCCCACGATTTAGGAACACTGGTGAT
GGCTGAGCACTACACCGCTCTTCGAATACCTTCCTGACGATGGTAACCAT
GTCCTTACTGCCCAGTGGTGCCGTTACTCGTCTGTGACCTGACGGCAGAA
CCTGCCTACAAGTCTCCTTGGGCAATGTGCTGCGACTCCGGACTAGAGAA
GAGCAGTAGCCACAGGGAGACTTTTTGTGCATCCCTGGGGTTGGACACTG
ACACACATTGCCATGACAAGTGGTAGAGGGCCACGGGGACATAGGGGACT
TCCCGCCACCCACGCGACCCGAGCGCTTGCTGGCCACCACGTTGCCCTCT
TGGTATGACGACCCTGGGTAGGGTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_f06.b1 MSMg01no159_f06.b1 CHROMAT_FILE:
MSMg01no159_f06.b1 PHD_FILE: MSMg01no159_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:02 2005
         (258 letters)



>mm_chr8_73084317_73084974
          Length = 658

 Score =  491 bits (254), Expect = e-143
 Identities = 254/254 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggagcttgtggccacacccctctctagagacccccccaagtgtctctgactcg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggagcttgtggccacacccctctctagagacccccccaagtgtctctgactcg 264

                                                                       
Query: 65  tgcaccagagaccagcctttgtctaggattgggaaagcaagtaggtgtgtctgtgcacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaccagagaccagcctttgtctaggattgggaaagcaagtaggtgtgtctgtgcacag 324

                                                                       
Query: 125 attatctctctatgtgtgtgcatgtgcacccatgtgtggagtgtgggtgggtaggagggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attatctctctatgtgtgtgcatgtgcacccatgtgtggagtgtgggtgggtaggagggc 384

                                                                       
Query: 185 catgtgtgttctgatgcagctttgtgcctggagttcttaaaacactctagagacaggaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgtgtgttctgatgcagctttgtgcctggagttcttaaaacactctagagacaggaag 444

                         
Query: 245 agctattcttggag 258
           ||||||||||||||
Sbjct: 445 agctattcttggag 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no159_f06.g1 MSMg01no159_f06.g1 CHROMAT_FILE:
MSMg01no159_f06.g1 PHD_FILE: MSMg01no159_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:02 2005
         (283 letters)



>mm_chr8_73235968_73236650
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcatgtcaccctccctgctacattccagaccctctgaaggtggcaagctagatggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctgcatgtcaccctccctgctacattccagaccctctgaaggtggcaagctagatggaat 424

                                                                       
Query: 61  ggaggcgctagcgaaggggctgttctgcaaggagttctgagaggtacagctgtcctggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggaggcgctagcgaaggggctgttctgcaaggagttctgagaggtacagctgtcctggca 364

                                                                       
Query: 121 gcggaccctgggatagctcttggctaacacaatctgtgggtgctgtgggatcttggccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gcggaccctgggatagctcttggctaacacaatctgtgggtgctgtgggatcttggccag 304

                                                                       
Query: 181 taactcatccagaagggacctgtgatggtcagtggcctggctcagggaatggggtggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taactcatccagaagggacctgtgatggtcagtggcctggctcagggaatggggtggggc 244

                                                      
Query: 241 tgaggacacttgggggtgcttctcctgtttgagggtagacctg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgaggacacttgggggtgcttctcctgtttgagggtagacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)