BAC Information

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BAC

Clone NameMSMg01-159N12
Chromosome8 (Build37)
Map Location 52,577,416 - 52,577,730
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159N12.T7 (MSMg01no159_n12.b1)MSMg01-159N12.TJ (MSMg01no159_n12.g1)
ACCAG359673AG359674
length731732
length of high quality
(start - end)
321 (45 - 365)46 (177 - 222)
definitionCHROMAT_FILE: MSMg01no159_n12.b1 PHD_FILE: MSMg01no159_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:38 2005CHROMAT_FILE: MSMg01no159_n12.g1 PHD_FILE: MSMg01no159_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATAAAATGGATATAAAACTACAGATTATAATCTACAAAACATTTT
GCCCAAAACCCAAAAATCAAGGCTCAAAATTCTGTGGCTATAACTCCAAA
GTAAAGCTCGCTTATTGAAATCATGTCCTGTATCCTATCAGAAAAAACAG
ACTAAAGTTTGACATCAACCTCAATAGAAATGAGTAGATATAAACAAATT
GACAGAAGCTAGATACAATTGACTCTTAATAAGTTTAAAAATTATATATG
CTATAAATATAATCTGTAACTCCACACTTTGGTCTTCATTCTTCTTGAGT
TTCATGTGTTTTGTTAATTCGCCCTCATATCTTGGGTATTCTAAGTTTCT
GGGCTAATATCCACTTATCAGTGAAAACATATCATTTGAGTTATTTTGTG
ATTGGGTTACCTCACTCAGGATAATGCCCTCCAGGTCCAAACATTTGCTT
GGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTG
TAAATGTACCACATTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGTT
TCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA
GCATGTTTCTTTCTTACTAGTTGGAACGTTACAGAGACAAAGTTTGGAGC
TGAGACAAATGGATGAACCATCTAGAGACTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATAATAATGGGTTTTGGGAATA
CTTAAAACTATTTGCAAAAATCAAGCTGCCAATTTAGCCCTGCTGAAATA
TAAAAGTTACAATTTTCTTCAAGGTACAATTTCTTCAAAAACACTCTAAA
TCCTTTGAATATATAAAAAATATTTACACATCATTGTTGCTGAAGCCATG
TGGGAAATTTATCTAATTAAAAAAATAAGGATTCCAGGGCCAAGCCCAGA
ATAAGGGCAATTTCACAAACTAACTCTTTAAAAGGGCTCCTTTTCTCTCA
GGCCACCTTGTAAAAAACAACACCCACAATTTTATACATTCAAAAAAAAA
TTACTTCAAATAGAAAACTTTGAAAAAAGAACTGTAAAAATAATCTATGC
CATGATAGAATGGCCACAAATTGCCGGGTTCTTGCTGAGGGGAAGGAAGC
TTGGGCTCTTTATAGCCCTTCTGGAAAATACTCAAATTCATTTTATTAAA
CGGCTTCATTATTCACTGTAAATAAACATCCTAAATAAAATATATTTGAT
CTAAAAAAGTACACATTTATAGTATTGAGGACACATAATAAAATGTTTCA
CATTAATAAGGCATTAATAAATGACATTTAAAATATTCCAGGGAATGCTA
TACACTGGGAAACATGTTTTACATGAATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_n12.b1 MSMg01no159_n12.b1 CHROMAT_FILE:
MSMg01no159_n12.b1 PHD_FILE: MSMg01no159_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:38 2005
         (321 letters)



>mm_chr8_52577255_52577975
          Length = 721

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctataaaatggatataaaactacagattataatctacaaaacattttgcccaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaattctataaaatggatataaaactacagattataatctacaaaacattttgcccaaaa 417

                                                                       
Query: 65  cccaaaaatcaaggctcaaaattctgtggctataactccaaagtaaagctcgcttattga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 416 cccaaaaatcaaggctcaaaattctgtggctataactccaaagtaaagcttgcttattga 357

                                                                       
Query: 125 aatcatgtcctgtatcctatcagaaaaaacagactaaagtttgacatcaacctcaataga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aatcatgtcctgtatcctatcagaaaaaacagactaaagtttgacatcaacctcaataga 297

                                                                       
Query: 185 aatgagtagatataaacaaattgacagaagctagatacaattgactcttaataagtttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aatgagtagatataaacaaattgacagaagctagatacaattgactcttaataagtttaa 237

                                                                       
Query: 245 aaattatatatgctataaatataatctgtaactccacactttggtcttcattcttcttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aaattatatatgctataaatataatctgtaactccacactttggtcttcattcttcttga 177

                          
Query: 305 gtttcatgtgttttg 319
           |||||||||||||||
Sbjct: 176 gtttcatgtgttttg 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)