CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAATCAATAGGGGTAAAACTTCCAGGTCATTCACAGTGTGATTTC
TCATGTTTTATTACTGAGGTATGTGACACATTTAGCAATAGGGGTTTTAC
TGTCAATTTCTGAGGAATAACCAACAGTCATGGCAATAGCTTGGGCTGTG
GGTGAATTTATGGGAACTCACTGGGCAAACAACTTCAAAACATTCGCTGA
CCTCTGGTAGTGGAGTTGTATTGCTAGCATTTGAGTTTAATAACATGTTT
GTCCTTCCATTGTAGGATAATTCTATTACAACTTTTTACATGTACATCTA
TTAATGAATAGGTATTAATAACATATCTGGGTCTAAAGTTTGGTATTTGA
AGCAATAGGGCAACGCAAAATCAGAGGAAGACACTGATCACACCGGTGCT
GAGACCTGATGGGACAGTTGTATATCTATATTTGCCTTGGTAGAGAGATG
ATAATTCATGATCCACTCTTGGAACTATGCCTGGCTGACTGAGTATTTCT
TGGTGACAAATTCATTTTCCCAAAGAAGCATTTTTATTATTCTGCTGTCT
GAGAAAGTACAATGCACTGTTTTTGCTGTTGTTTATTGCTGCCGCCCTGA
TCCATTTCCTGCTTTGCCTTCTTACTTCCCCCGTTTATCTTCTCACATCT
CTTACTCTATTCCTTGTCCACTATTCTCTCTTTGTCTTCTTTCCCTCTCA
CT

AGATAAGGATAAAAAAAAAGGTGGGTTTTNTAATTCCCAAAAACCGGGGG
GGGGGGGTGGGTTGGAAAAAAACGGTTGTGGGTTGGTGTTTTTTTGGTGG
GGGGGGGTGGGGGAGGGGGGGGGATGGAAGAGTTGGGGGAAAGGGTTAGG
GATTCACCCTCGCCACCACTCGGGAATCTGTTGTATGTATAATCATAGGG
GTGTAAGCAGGGGGGGGGGGAGGCGGGCGTTTGGGGGTGGGGGGGGGGAG
GGGTTGGTGTTATTGTATGGAGGTCAGCCCCGGGGGGGGGCCCGGCGCTN
NTTNNNNNCCGCAATGACTATGGGTTAGGCCTGGNGGGCCGNNCCGGGTT
CAAXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGCGGAAATCACATCAGCC
AAAATATTCATAGGTTATATACAAACTCTCCATACTTTACCCTTTTTTTC
TTTCCCATTTTTAACTAATCCAATCCATCTAATCTTTTAAAAAAAATTAA
ATTTTTAAAAACTGGGTTGGGGTTAATTGGGGTAAATTGGGGCCCTTTTT
GGGGAATTTTGGGGGGTTAAGGGG

Query= MSMg01no160_f06.b1 MSMg01no160_f06.b1 CHROMAT_FILE:
MSMg01no160_f06.b1 PHD_FILE: MSMg01no160_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:15 2005
         (557 letters)



>mm_chr8_100538717_100539673
          Length = 957

 Score =  977 bits (505), Expect = 0.0
 Identities = 541/553 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaatcaataggggtaaaacttccaggtcattcacagtgtgatttctcatgtttt 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattctaatcaataggggtaaaacttccaggtcattcacagcgtgatttctcatgtttt 264

                                                                       
Query: 65  attactgaggtatgtgacacatttagcaataggggttttactgtcaatttctgaggaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attactgaggtatgtgacacatttagcaataggggttttactgtcaatttctgaggaata 324

                                                                       
Query: 125 accaacagtcatggcaatagcttgggctgtgggtgaatttatgggaactcactgggcaaa 184
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 325 accaacagtcatggcaatagcttgggctgtgggagaatttaagggaactcactgggcaaa 384

                                                                       
Query: 185 caacttcaaaacattcgctgacctctggtagtggagttgtattgctagcatttgagttta 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 caacttcaaaacattcgctgacctctgttagtggagttgtattgctagcatttgagttta 444

                                                                       
Query: 245 ataacatgtttgtccttccattgtaggataattctattacaactttttacatgtacatct 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaacatgtttgtccttccattgtaggataattctattacaactttttacatgtacatct 504

                                                                       
Query: 305 attaatgaataggtattaataacatatctgggtctaaagtttggtatttgaagcaatagg 364
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 505 attaatgaataggtattaataacatatctgcgtctaaagtttggtatttaaagcaatagg 564

                                                                       
Query: 365 gcaacgcaaaatcagaggaagacactgatcacaccggtgctgagacctgatgggacagtt 424
           |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaatgtaaaatcagaggaagacaccgatcacaccggtgctgagacctgatgggacagtt 624

                                                                       
Query: 425 gtatatctatatttgccttggtagagagatgataattcatgatccactcttggaactatg 484
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtacatctatatttgccttggtagagagatgataattcatgatccactcttggaactatg 684

                                                                       
Query: 485 cctggctgactgagtatttcttggtgacaaattcattttcccaaagaagcatttttatta 544
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctggttgactgagtatttcttggtgacaaattcattttcccaaagaagcatttttatta 744

                        
Query: 545 ttctgctgtctga 557
           |||||||||||||
Sbjct: 745 ttctgctgtctga 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)