BAC Information

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BAC

Clone NameMSMg01-161B23
Chromosome8 (Build37)
Map Location 92,334,336 - 92,334,715
singlet/doubletsinglet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161B23.T7 (MSMg01no161_b23.b1)MSMg01-161B23.TJ (MSMg01no161_b23.g1)
ACCAG360609AG360610
length1,2141,205
length of high quality
(start - end)
414 (41 - 454)382 (73 - 454)
definitionCHROMAT_FILE: MSMg01no161_b23.b1 PHD_FILE: MSMg01no161_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:23 2005CHROMAT_FILE: MSMg01no161_b23.g1 PHD_FILE: MSMg01no161_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTAGCACTGGGCCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATGACAATTGTGACACAACTTAACCAAACCTATGGGACACAATGAAAGC
AGTGCTAAGAGGAAAATCCATAGCACTGAGGGCCCTGGTATATAAATTGG
AGAGATCCTACACTAGCAACTTAACAGCACAGGTGAGAGCCCTAGAACAA
AAAAAAGCAAACACACTCCAAAAGGGTAGACAGCAGGAAATAGTCAAACT
CAGGGCTGAAATCAAACAAATAGAAACAAAGCAAACAACACAAAGAAACA
AGAAAACCAAAATCTGATTCTTTGAGAAGATCAACAAGATAGATAAACTC
CTAGCCAAACTAATTAAAGGGCACAGAGACACTATCCAAATTAGCAAAAT
CATATATGAAAAGGGAGACATAACAACAGAAACTGAGGCATTTAAAAAAA
TCATTTTATACTCCCCCCCAATTCATTCTATGAAGCCACAAGTACACTGA
TACCTAAACTATTCAAAGACCCAACAAAAAAAGAACTTCAGACCAGTTTC
ACTTATGAATGTTGATGAAAGAATACTCAATAATGTTCTAGCAAACTGAA
TCCAAGAGCATATCAAAACCATCATTCACTACAATCAAGTAGGCTTTATC
CCAGGAATGCAAGGTTGGTTCAATATATTAAAATCCATTAACATAATCTT
CTCAAAGGAAAAAAAATCACATGATCATCTCATTAGTTGCTGAAAATTAT
TTGACAAAATACAACACCCCTTCATGTTAAAAGAATGGAGATATCATGAA
TTCAAGGCCCATACCTAAACACAATTAAAGCAAGATACAGCAAACCAACA
GCCAATATCAAATTAAATGGAGAGATCCTTTGAAGCAATCCCACTAAAAT
CAGGGACAAGACAAGGATAATTCCCTTTCCCCCTATCTATTCAAAAGAAC
ACTCAAAGTTCCTGCTAGAGGCATTAAGAAACACAACGGGAGACCCAGGG
GAATAAAAATTTGGTCAAAAAAAGAATCCAGGAGGGCCCCTATTTTGCGA
AGAAAATTTCTTAAGACTTCCAAAATTTTTCCCAGGGAAATTTCTGGTTG
TTGATGGAACAACTCCCCCAAAAGGGGGGGGGGTTTAAATTTAACCCTAG
AAAAACCCGTAGGCCCCTCTTTATTACAAAGAAAAAAAGGGGCGGGAAAA
AGAAATTAAGGTAA
NNNATCTGAGGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGGTCTTAGGAAAGATAAGGTAAAAA
CTGAAGTATCCTGGGAGAGAGACTGCCCTGTTCTCTGAGGATGAGGAAGG
AGCATCAAGTGGGAGGTGTTACTGTGCTGATCGGCTTACTAAGAGGCTCA
GTTATCAGCCATGGCATTGCAAGGAAGAAAATTGTGTAAAGGATTGCTAG
GAGGAAGTAGACCTAACACAGACTATACTGGTTACTTTTCATTGCTGTGA
CCAAAATATATGACATCAACAACTAAAGAGAGGAGGGCTCATGGTTTAAA
AGGGTCCAGAAAAGGACAAGTAGGGACAGGAAATAGACTCTAAAGACCCA
CCCTCCTCTCTAAGTTAGTTCTTCCAGGCTGGCCCAATTTCCTAAAGCTT
TCTTTTTTTTTTCCCCCCCCACCAACAATTATTCAACATATGAAAACAGG
GGGTTCGTTAGTTTCAAACCATGACACAGATCCAAAAAGAGACCCTGAAC
CAAACTCAGCTTTGAGCTTTGGGGTGCCAGAGAATAGGTATTTCCAAGAT
GCCCTAGAAAACTGAGGCATTTCCCCACATTTCTTGACCCATTCTAGGCG
AAGCTTAGGCGCCTCTGAGGAGCAGAAACTGGGACACTCAGCACTGTGTC
CTCTAACGCACAGTACAGAGTATCTGACCAATATGCATAAGACAAGTGTT
TATGTATTGAAGGAATTCACAAATGTGCCAGAGATTGGGAAGTTGGGCGG
TGGAATCTCTGAGTACTACTAGGCAATGGAAACGGAGAATGTGTGTCTAG
AGCCTGTATCTGGATTACTCATAGTGTACTAGGCTGCCCACAATGAACCA
TGCTGTGTTTTGCTTCACTGTTTCTACTGTTTCTGCGGCCCCCCCCTGTA
GCCCCCCCCCGCATGGGCCCCCAAAACTTCAGGGGTTCTTAATCTGAAGA
CCCCAAAAAAATGTTCGGGTTTTTGTACTACGGGGCCCCGGATGAAGGGG
GAAAGTTAAAACTTCCCCCCCCTCCAGCCAAAAATTTTTTTTTTTGGTCC
CATTGGTGGGGGGGGAAAAATAACATCCTCTGCGAGTTCTCTGGGGTGGA
AACTTTCTTTTCTCTTTAGTCTCTATGTAAGTCACCCTTGTTAAGTCCCA
TCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_b23.g1 MSMg01no161_b23.g1 CHROMAT_FILE:
MSMg01no161_b23.g1 PHD_FILE: MSMg01no161_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:23 2005
         (382 letters)



>mm_chr8_92334136_92334917
          Length = 782

 Score =  735 bits (380), Expect = 0.0
 Identities = 380/380 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggtcttaggaaagataaggtaaaaactgaagtatcctgggagagagactgccctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggtcttaggaaagataaggtaaaaactgaagtatcctgggagagagactgccctgtt 260

                                                                       
Query: 61  ctctgaggatgaggaaggagcatcaagtgggaggtgttactgtgctgatcggcttactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgaggatgaggaaggagcatcaagtgggaggtgttactgtgctgatcggcttactaa 320

                                                                       
Query: 121 gaggctcagttatcagccatggcattgcaaggaagaaaattgtgtaaaggattgctagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggctcagttatcagccatggcattgcaaggaagaaaattgtgtaaaggattgctagga 380

                                                                       
Query: 181 ggaagtagacctaacacagactatactggttacttttcattgctgtgaccaaaatatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagtagacctaacacagactatactggttacttttcattgctgtgaccaaaatatatg 440

                                                                       
Query: 241 acatcaacaactaaagagaggagggctcatggtttaaaagggtccagaaaaggacaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatcaacaactaaagagaggagggctcatggtttaaaagggtccagaaaaggacaagta 500

                                                                       
Query: 301 gggacaggaaatagactctaaagacccaccctcctctctaagttagttcttccaggctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggacaggaaatagactctaaagacccaccctcctctctaagttagttcttccaggctgg 560

                               
Query: 361 cccaatttcctaaagctttc 380
           ||||||||||||||||||||
Sbjct: 561 cccaatttcctaaagctttc 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)