BAC Information

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BAC

Clone NameMSMg01-161O24
Chromosome8 (Build37)
Map Location 111,256,522 - 111,256,849
singlet/doubletsinglet
Overlap geneAtbf1
Upstream geneLOC100041744
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161O24.T7 (MSMg01no161_o24.b1)MSMg01-161O24.TJ (MSMg01no161_o24.g1)
ACCAG361210AG361211
length1,1601,218
length of high quality
(start - end)
---329 (71 - 399)
definitionCHROMAT_FILE: MSMg01no161_o24.b1 PHD_FILE: MSMg01no161_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:08 2005CHROMAT_FILE: MSMg01no161_o24.g1 PHD_FILE: MSMg01no161_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTAATGATTGGGGCTATAGATCTNAGGGGAGGATCCGGGAATTAGGGAA
NAGGANAACCATTAGGAGCNNNNNNNNNNNGNNNNNNNNNNNNGNCTTTT
AAGGANNNGNNNNNNNGNNNAGANNNNNNNNGGNAGNANNAGANANNNNG
GAAAGNAANTTTTTTAGAGGAAAAAAAAGNAAGGGANNNNNNNNAAGNNG
NAAAGAGAGAGNGAGAGNNGGGGGGNNGGAAAGAGGGGGNAGAAGGGNAG
NNAGGGGGNNNNNNGGGANNAGANAGGNNNNGGGGAGAGANGNAGAAAGG
AAGNNTTTTTTTANNGNGNGNNNNNNNGNNGNNNGNNNNAGAGAANAGNN
AANAGAANAAAAGNNANGGGNANNTTGTTTTTTTTTANNNNNNGGNGANN
ANAGANANNAANGNAAGAAAGAAAAAANTTTTTTTTTTTCCCCCCCCGNA
NNNANGGAGNATTTTAAAAAAAAAGAGGGGTGNNNTGTGTATGTNTTNAN
GTANGTAGTTAGGTGGAGTATTNTTAATTTGGGATATTTATAGTATTTAG
GGTGTTAGGGAATATTTAAAGTTTTTTGATTGTATGTGGGTGGTTATTTN
ATGGAGAGGGGAGAGTGGGNATGATTTNAATNAGAGATTATGTTNTTGAA
AAGTTGTTNTTTGTTNNTNTAATTTGATTTNGGGGGATTTTTGGTTTTAT
TGTGGAATNTGGGGTTCCAGGAATTTTTATATTNATATANAGAGAATTTG
TTTTTTTTTTTTTTTTAAANANGGACGAGAGAAGTTTTTTGAANGGTATG
GGGTAAGTGTGTAGAAATAAGTAAAGGGATCAAGGTGAGGTTGGAGGTGT
ATGGGANGGANAGGAAATAAAGAGGGGAAGGTTTTTGTGTTAAGTTGTGA
GGGTTTAAAAATAAAATGGAAAGGGGAATTTATAATTGGGCGTGGGGAAA
AATTTTATTTGAATGGATTTGGGAAGTTAAGCATAATTGGGGAAAGGGGG
GGTTAATTGTAAGGTTTAAAAAATATGGAAAAAAATGGGAATTGTGTGAG
GATATAGAAAAAGGGGTTTGGGTGGGGGGAAAAATGGTTGGTGGTTTTGA
GGGGGTTATTAGAGGGATGGAATAAAATGGGAGTTTGGGGTAAGGGTATT
GTGGTTATTT
NNTTTATGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTTCTCTTTCTTTTCTCTCTTCCTCAAC
GCCCCCCCCCAACCCCCACCGATTTCTTTTGCTCTGGTGTATTAGAAAGG
ACACGGCATTTATCTGGAGATTTCTTCCCACCCCCAACCACATAAACAGG
ACTTGAAAAGGGCTTATCGGACAAACGATTTGCTCACACAACCATTGCCG
GAAGTGGGAATCCCAGCAGGGAACTGGACGAGCCCCACTATCCCTGAGTG
GACAATCTTAGGCGGCTCTTGTTACTTCTCTTGAGGAGAGTGAGGGGGAG
GCCAGAGACAGGACTGACAGAGGGAGGACCACTGTAAAAGCTACAATGTT
TTTTTTCACACAAANAANAACTCTCTCGCCTTCATTCTTAGGATAATATT
TGNGTCTTCCCCCGGCCCCANNNGANNAGACCCACTAAAAGAGAAAGGGG
GGGGGAGGGGGNNGGNAGGGAAGGAANGAAANNNNNAGNAGGANNNNNNG
GGNNNNNNNAANNAAANNNNAGGAANGGNGGGAGGNNNNNANNAANGNNG
NNGNGGAANNGNANNNNAAAAAAANNAAGNNNNAAAAAAAAANNNNNNGG
NNANNNAGGGGNNAAGGAAAAAAAAAAAAAAGAAAGAAANNNANGAAGNN
NNNAAGGNGAAGAAAANNANNNNAAGGGNGGAAAAGGGAAANNNAAAAAA
ANAGGGNNGNNAAAAANNNANGAGGNNAANANAAGAAGAAGAGNNGNNNA
AGAAGGGGAGAAAAAAAAGGGGNNGGAAGAAAAAGAGGGAAANNGGNNNN
NAAAAAAANNNAGAAAAAAAAANNNAAGGGGAAGAGAANAGAANNNAAAA
AGGAAAAAAAAGAAAGNNNNNNGGNNAGGGAAAAAANNNNNNNNAAAAGA
AAAAAGGAGGGNAGAGAANNNGNGAGGGAANNAAAAAAAAAGGGGGAAAA
GGNGNAGAAAAAAAAAAAAAAAAAAAGGGGGAAAAGGGGGAGAAAAGGNA
AANAAAAAAGGAAAGGGGGAAGAAAGAAAAAGGGGGGAGGGGAGGGAAAA
AAAAGAAAAAAAGAGGGGGGANNGNAAAAAAAAAAANGGAAANNGAAGGG
GGAAAGAAAAAAGAAAGAGGGGAGGGGAAAAAAGAGGGAAGAGGGGGAGA
AAAGAAGAAAAAAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_o24.g1 MSMg01no161_o24.g1 CHROMAT_FILE:
MSMg01no161_o24.g1 PHD_FILE: MSMg01no161_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:08 2005
         (329 letters)



>mm_chr8_111256322_111257050
          Length = 729

 Score =  603 bits (312), Expect = e-177
 Identities = 324/328 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttctctttcttttctctcttcctcaacgcccccccccaacccccaccgatttctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tttttctctttcttttctctcttcctcaacgcccccccccaacccccaccgatttctttt 469

                                                                       
Query: 61  gctctggtgtattagaaaggacacggcatttatctggagatttcttcccacccccaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 468 gctctggtgtattagaaaggacacggcatttatctggagatttcttcccaaagccaacca 409

                                                                       
Query: 121 cataaacaggacttgaaaagggcttatcggacaaacgatttgctcacacaaccattgccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cataaacaggacttgaaaagggcttatcggacaaacgatttgctcacacaaccattgccg 349

                                                                       
Query: 181 gaagtgggaatcccagcagggaactggacgagccccactatccctgagtggacaatctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaagtgggaatcccagcagggaactggacgagccccactatccctgagtggacaatctta 289

                                                                       
Query: 241 ggcggctcttgttacttctcttgaggagagtgagggggaggccagagacaggactgacag 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggcggctcttgttacttcacttgaggagagtgagggggaggccagagacaggactgacag 229

                                       
Query: 301 agggaggaccactgtaaaagctacaatg 328
           ||||||||||||||||||||||||||||
Sbjct: 228 agggaggaccactgtaaaagctacaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)