BAC Information

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BAC

Clone NameMSMg01-162E04
Chromosome8 (Build37)
Map Location 55,106,737 - 55,107,063
singlet/doubletsinglet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17, Gpm6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162E04.T7 (MSMg01no162_e04.b1)MSMg01-162E04.TJ (MSMg01no162_e04.g1)
ACCAG361443AG361444
length703711
length of high quality
(start - end)
602 (44 - 645)328 (384 - 711)
definitionCHROMAT_FILE: MSMg01no162_e04.b1 PHD_FILE: MSMg01no162_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:35 2005CHROMAT_FILE: MSMg01no162_e04.g1 PHD_FILE: MSMg01no162_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGAAGTTCTCACGCCAATGAATGGATCTGGAGGATATCATCCTGAG
TGAGGTAACCCAATCATAAAACAACACACATTATATACACTTACTGATAT
GTGGATATTAGTCCAGAAGCTCGGAATACCCAAGATACAATTCACAAAAC
ACATGAAACTCAAGAAGAAAGAAAACCAAAGTGTGGATAGTTTGATTCTT
CTTAGAAAGAGGAACAAAATATCCATGGAAGGAGTTACTGAAACAAAGTG
TAGAGCAGAGACTGAAGGAATTACTATCCAGAGACTGCCCCACCTGGGAA
TCCATCCTATATATAGTCACCACACCCAGACCCTACTGTAGATGCCAACA
AGAGCTTGCTGACAGGACCCTGATATAGCTGTCTCCTGAGAGGCTCTGCC
ATTGCCTGACAAATAGAGAAGTGGATGCTCACAGCAATCCATTGGACTGA
GCACGGGGTCTCCAATGGAGGAATTAGAGACAGGACCAAAGGAGCTGAAG
GGGTTTGCAGCCCCATTTGAGGAACAAAAATATGAACTAATCAGTACCCC
CAGAGCTCCCTGGGACTAGACCACCAACCAAAGAAAACTCATGGTGGGAC
TCATGGCTCCAGATTCATATGTAGCAGAGGATGGCCTAGTTGGTCATCAG
CGG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTAAATTCAATAAAACTGGGCTTAG
ATGGGTTAACCTATTATTTCCTTTTAGCTTTGGTTTAGCTTGTATGTGAA
ACAGCATCAGCAGTGATGAGTGGTTTTAGGATTTGGAAATGAAACATCAA
GCAATTGAAGGAGGGACTTTCCTTGCAAGGATTGTTTTGAGCCAGGACAC
GATCATCTTAGATATGTTAAGAAGTGGGAAAGTAATAAATGAGTTTTGAT
AACTAATAGCTGTGCAATAGTCAGGTTTTAGTTCTGAGAAAGTACTGTAC
GAAGGGCAATTTTTATTCTTCACCCGCCCCACAAAACTATTTTATATCAT
TAAAATAAATTGAATTTCTTCGAATTTTTTGAATCAAACAGTGGAACTAC
ATATTTATGGACGACTTCTGGAAATGCATAGTAACCCTATGTTGACTCAC
ATGACATCAGCTTTTAGTCCTGATGTTAACCAAGATGGGTACTGTTATTC
CCACCTCTCATGTTCCAGGCATCCAGTCATCGGATGTAAAAATAAAAATG
GCAACAAATGCTGATTTATATAAAGATCAAATGTGGGGATCTATACAACT
CCATTTTCACTTGCTATCTCTTCTCTCTGCTATTTCATCCCTTTCTCAAA
AAGAAAACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_e04.g1 MSMg01no162_e04.g1 CHROMAT_FILE:
MSMg01no162_e04.g1 PHD_FILE: MSMg01no162_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:35 2005
         (328 letters)



>mm_chr8_55106537_55107263
          Length = 727

 Score =  627 bits (324), Expect = 0.0
 Identities = 327/328 (99%), Gaps = 1/328 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactattttatatcattaaaataaattgaatttcttcgaattttttgaatcaaacagtg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 527 aaactattttatatcattaaaataaattgaatttctt-gaattttttgaatcaaacagtg 469

                                                                       
Query: 61  gaactacatatttatggacgacttctggaaatgcatagtaaccctatgttgactcacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaactacatatttatggacgacttctggaaatgcatagtaaccctatgttgactcacatg 409

                                                                       
Query: 121 acatcagcttttagtcctgatgttaaccaagatgggtactgttattcccacctctcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acatcagcttttagtcctgatgttaaccaagatgggtactgttattcccacctctcatgt 349

                                                                       
Query: 181 tccaggcatccagtcatcggatgtaaaaataaaaatggcaacaaatgctgatttatataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tccaggcatccagtcatcggatgtaaaaataaaaatggcaacaaatgctgatttatataa 289

                                                                       
Query: 241 agatcaaatgtggggatctatacaactccattttcacttgctatctcttctctctgctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agatcaaatgtggggatctatacaactccattttcacttgctatctcttctctctgctat 229

                                       
Query: 301 ttcatccctttctcaaaaagaaaacctg 328
           ||||||||||||||||||||||||||||
Sbjct: 228 ttcatccctttctcaaaaagaaaacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 727
Length adjustment: 9
Effective length of query: 319
Effective length of database: 718
Effective search space:   229042
Effective search space used:   229042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)