Query= MSMg01no162_h04.b1 MSMg01no162_h04.b1 CHROMAT_FILE:
MSMg01no162_h04.b1 PHD_FILE: MSMg01no162_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:49 2005
(308 letters)
>mm_chr8_58518885_58519594
Length = 710
Score = 563 bits (291), Expect = e-165
Identities = 301/305 (98%), Gaps = 2/305 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgccatctctctc--atgagaaaaatgttgtgctgaaactaacatgctgttgt 62
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgccatctctctctcatgagaaaaatgttgtgctgaaactaacatgctgttgt 264
Query: 63 tgatatatttgtaacaatagtagcatgtttttaaatataaagaaaattagacatatttag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgatatatttgtaacaatagtagcatgtttttaaatataaagaaaattagacatatttag 324
Query: 123 gctttaggcataacattaattctctttcttagtttgttcttgttcttgttaattattttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctttaggcataacattaattctctttcttagtttgttcttgttcttgttaattattttt 384
Query: 183 tcataagcaatagaggcctttgattttcatcttatctttataatgttaaaggtgtttcta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcataagcaatagaggcctttgattttcatcttatctttataatgttaaaggtgtttcta 444
Query: 243 tttttaccaagcggtagaatacgtaaagaaaatatttttattgtcatggttattttgaaa 302
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 445 tttttaccaagcggtagaatacgtaaagaaaataatcttattgtcatggttattttgaaa 504
Query: 303 acttg 307
|||||
Sbjct: 505 acttg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 710
Length adjustment: 9
Effective length of query: 299
Effective length of database: 701
Effective search space: 209599
Effective search space used: 209599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_h04.g1 MSMg01no162_h04.g1 CHROMAT_FILE:
MSMg01no162_h04.g1 PHD_FILE: MSMg01no162_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:49 2005
(633 letters)
>mm_chr8_58601982_58603014
Length = 1033
Score = 1033 bits (534), Expect = 0.0
Identities = 546/550 (99%)
Strand = Plus / Minus
Query: 84 gatctgagttcgaatcccaacattcacatggtgactcacaactgcatataactctggccc 143
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 gatctgagttcaaatcccaacattcacatggtgactcacaactgcatataactctggccc 974
Query: 144 caggggatccagtgctcttttctggcttccatagacacttcaagcacatggtacaaatag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 caggggatccagtgctcttttctggcttccatagacacttcaagcacatggtacaaatag 914
Query: 204 actttcacaaacacacatacgtacacagaaaaagtttaattagaacctctacacaatgta 263
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 913 actttcacaaacacacatacgtacacagaaaaagtttaattagaaactctacacaatgta 854
Query: 264 atataaaattaaaaatataacatctctatggtagagaaacagtttattaaccgatttata 323
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 atgtaaaattaaaaatataacatctctatggtagagaaacagtttattaaccgatttata 794
Query: 324 ataaaaatcaatgaataatttaaaggatgagaataaatggttactgataacaagaatctg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ataaaaatcaatgaataatttaaaggatgagaataaatggttactgataacaagaatctg 734
Query: 384 ttttttttcttttgctagtaaaactgcaagtttaaaggtattgattaatatcttttatag 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttttttttcttttgctagtaaaactgcaagtttaaaggtattgattaatatcttttatag 674
Query: 444 ttatatctttgttcaaagaggtctttttcatataagcttaagagaaaaaagtaatcattt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttatatctttgttcaaagaggtctttttcatataagcttaagagaaaaaagtaatcattt 614
Query: 504 ggttcaaaacttaattaggtctatgaaggtagctgctcaatacatactatattataaaat 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggttcaaaacttaattaggtctatgaaggtagctgctcaatacatactatattataaaat 554
Query: 564 gtaaaagtgaaagtaaccataattatggatagaaagggtaagaaagtgatcaagattgat 623
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 553 gtaaaagtgaaagtaaccataattatggatagaaagggtaagaaagagatcaagattgat 494
Query: 624 tcagtaaaat 633
||||||||||
Sbjct: 493 tcagtaaaat 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
