BAC Information

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BAC

Clone NameMSMg01-162P16
Chromosome8 (Build37)
Map Location 18,256,325 - 18,402,808
singlet/doubletdoublet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162P16.T7 (MSMg01no162_p16.b1)MSMg01-162P16.TJ (MSMg01no162_p16.g1)
ACCAG361934AG361935
length724722
length of high quality
(start - end)
319 (44 - 362)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no162_p16.b1 PHD_FILE: MSMg01no162_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:28 2005CHROMAT_FILE: MSMg01no162_p16.g1 PHD_FILE: MSMg01no162_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,402,495 - 18,402,808)(18,256,325 - 18,256,613)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACAGTAGGGCTGGAGAAGCTCACCCAGGGTTAGTGACTTGTCCTAG
TCCCCAGGTAATGAGCAGCTCAATTGAGAGTCAACTGTACAGCACCTCAT
GTGCTAAGTTTTTGGTACTTCTGATGGCCACAAGGCACATAATCATGACC
TCTCAAAGGCTACTCATTGCCATGGAGGGGCTGAATTGGCTCAGCTTTTT
AGTTGCTAGGACAGTTTGAGTGCTCAGTGCTAAATGCCAGCTTCTCTCTT
CTTCCCTGGGCTGGGTGAATGAGCTGTTCTGATAGCAGAGAAAGAAGCTG
CTGGCAACACCTTTTTTTTCCTGCGCCCCACCCCCACTCCCCTGTCCACC
TCCTGACTTGGGTCCATCCATTCCTGCCTAAGAGATTATAGTAACTGCTC
ACCAGGTCTTGGCTTTTCTGATACATGAGGTTTCTCTCACCTTAACTAGA
GTTAAACCACTCTTATACTCAATAATTGATATAGTTTATTTAATTTCAAT
TGCAGTGCTGGACTCTCTCCCCTTTCCATCCCACCCACATAAGGTATCCC
AGTTAATTAATAATTGACTGCAATTCCTTCAGTATTTAATGGCTTATTTT
CCATGCTGTAGAACTTTCTCCCTATAATTCATCTCTCCCGCCTAAGCCTT
CCTCTTCTGCTGAGTGTAAAGTTG
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACACAGCTGCTTGGTGCCCTGGAGCTGTG
GCCCTTGGATTTGCATGCCTTGACATCCCTACCTGACCTCCACATTCACC
CTCCCCTTGCCTTTCATATTTAACTTTCATCTTACACTTACAGCCCACCC
TCACCTCAGCCCCACCCTTAGTCTCAGATCCACCTTCACACCCCCACTCT
GCAAGGAAATCAAAACACAACTAAATCAAAAGGTCTGCATTCTGCACTCC
CTGGGCATCTAGATGGCACAGCATTCCTCTGCCAAACAAGACAAAATCAG
AAGGAATTCCTTCTTATTGAACACCCCCCCGCCTGTGGCAGTGTCAGGGC
TCAGAACAGTTTTAAAACTACAGCTATCGAAACAGTTTAGAGAGACAAAG
GTGAAAAGGGAGATTCAGGAATGTAAAAACCCACATGAGGAGGACCTCTG
TCCATTTCCAGGGCATGTCATGTCCATCCTCTGATCATAAACCACTGTCG
GCTGCCAATGCCAGCACTCACTAACTTATTGTTTAGGGCCTCGTTCTCCT
GATCATGAATTTTTACGAGCCAAGGGACACTGCTTTTGAGGTACGCAGGA
ATCATGTGATAGTAAGGGACACTCTGCTCCATCCCACATTCTGTTTCCTT
CTCCTGTGCTATCCTGACACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_p16.b1 MSMg01no162_p16.b1 CHROMAT_FILE:
MSMg01no162_p16.b1 PHD_FILE: MSMg01no162_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:28 2005
         (319 letters)



>mm_chr8_18402291_18403009
          Length = 719

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacagtagggctggagaagctcacccagggttagtgacttgtcctagtccccag 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccacagtagggctggagaagctaacccagggttagtgacttgtcctagtccccag 459

                                                                       
Query: 65  gtaatgagcagctcaattgagagtcaactgtacagcacctcatgtgctaagtttttggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtaatgagcagctcaattgagagtcaactgtacagcacctcatgtgctaagtttttggta 399

                                                                       
Query: 125 cttctgatggccacaaggcacataatcatgacctctcaaaggctactcattgccatggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cttctgatggccacaaggcacataatcatgacctctcaaaggctactcattgccatggag 339

                                                                       
Query: 185 gggctgaattggctcagctttttagttgctaggacagtttgagtgctcagtgctaaatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gggctgaattggctcagctttttagttgctaggacagtttgagtgctcagtgctaaatgc 279

                                                                       
Query: 245 cagcttctctcttcttccctgggctgggtgaatgagctgttctgatagcagagaaagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagcttctctcttcttccctgggctgggtgaatgagctgttctgatagcagagaaagaag 219

                         
Query: 305 ctgctggcaacacc 318
           ||||||||||||||
Sbjct: 218 ctgctggcaacacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no162_p16.g1 MSMg01no162_p16.g1 CHROMAT_FILE:
MSMg01no162_p16.g1 PHD_FILE: MSMg01no162_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:28 2005
         (290 letters)



>mm_chr8_18256124_18256813
          Length = 690

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   cacagctgcttggtgccctggagctgtggcccttggatttgcatgccttgacatccctac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 202 cacagctgcttggtgccctggagctgtggcccttggatttgcatgccttgacacccctac 261

                                                                       
Query: 62  ctgacctccacattcaccctccccttgcctttcatatttaactttcatcttacacttaca 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 262 ctgacctccacattcaccctccccttgcctttcatatttaactttcatcttacatttaga 321

                                                                       
Query: 122 gcccaccctcacctcagccccacccttagtctcagatccaccttcacacccccactctgc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcccaccctcacctcagccccacccttagtctcagatccaccttcacacccccactctgc 381

                                                                       
Query: 182 aaggaaatcaaaacacaactaaatcaaaaggtctgcattctgcactccctgggcatctag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaggaaatcaaaacacaactaaatcaaaaggtctgcattctgcactccctgggcatctag 441

                                                            
Query: 242 atggcacagcattcctctgccaaacaagacaaaatcagaaggaattcct 290
           |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 atggcacagcattcctctgccaaacaagacaaaatcaggaggaattcct 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)