BAC Information

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BAC

Clone NameMSMg01-162P22
Chromosome8 (Build37)
Map Location 84,148,261 - 84,148,525
singlet/doubletsinglet
Overlap genenone
Upstream geneFrem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneInpp4b, LOC671182, Il15, EG666564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162P22.T7 (MSMg01no162_p22.b1)MSMg01-162P22.TJ (MSMg01no162_p22.g1)
ACCAG361943AG361944
length717715
length of high quality
(start - end)
269 (49 - 317)---
definitionCHROMAT_FILE: MSMg01no162_p22.b1 PHD_FILE: MSMg01no162_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:29 2005CHROMAT_FILE: MSMg01no162_p22.g1 PHD_FILE: MSMg01no162_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTGGGCAACAGTTAAACATTAAGCAATCATTACTGGCTCCA
AATCTCTGTACTAATTTTCTTCAGCCTAATTAGCAACATTTGGCAAAAGA
ATAATTGTCTTCATCCTGTGGATCACTAGCTTGATCACTAGCGTGTTGAA
GAGAGTGAGCGGCAAACGGGTCATCAGCAGACACTGAGTATATATCCCTT
CTATTCCTCGGGAAATCTAAGGAGCATGCAAGTTAAGTGGCTTGGCTGGG
GACAGTGTCCCAAGTGTAGCTCAAACTCTGATGGGAGAAGAAATACTGCT
CCCACATTTCCTGATTTGTATTTGCCCACCCTTCGTCCCCTTAAATAATA
AGTGAAAATAATCCTTACTTTCTACCGCGAAGTGATTACTTATTTGGGGG
AAAAGGAGGTAGAAATTATTTCAGAACCTGCGATATCATGGCGAACATCT
TGAGACTAAGATAAGAGAAGAATCTCGAATAACAAATCACCTAAAACGAC
TATTCAAGAGAGAAGGGGGGTAACTTACGTCAGTTGAAGCAAAGGGGTTA
GATAAAACAGGTGAACCCTTAAATATTGGGAGGAGATGGTCCTTATTCTT
GNAAAAAAGAGGAAGGGAGAAAGTAACAGAACAGAAAGTAAAGATAGAGG
GAGGTCACAGGGGAGAG
GGCGATGATGTGGGTAGGCTGGAGGNCGNCTGGCCGTCAAAAACAGGGTG
ANNTATAGGAGGATTCCCGAAATATCTGAGGTCTGGAGTTGGGGAAGGGA
GGGTCAGCCTTTATAAATAAGGTAGAGAGTGAGTGAGGAAAAGACCAAAG
TTAACTTTGGAGTCTCTGCAGATATGCGTACGCTAGGAGCTGCGCACGGG
CAGATCCGCCTACGCGCGTGAGAATATGGCTAAGACGCGAGTACGCACGC
GCGCGCACACACTCNTACNCATATACTCTGACTCGCACGCGCGGTGAGAC
CGACAAACGGTAGGGCGGGGGGCATTTATATTGAAAGGAGGGATGGAGGG
GCTTGGGGTGGGGGTTTGGTTTGGGCACGGCATGTGCGCGGGCCTGGCGT
CACTAGGGCAGGTACGAGAGTGGACAAAGGAGAGTAAATAGTGTCTCAGC
GGCGGGTCANTTTTAGTTACNTACTNNNGAAGGTCACGGACCACATAGAA
TCTAACATATCAAGCTCGCCNGCAGGTCAACTACGATATACATAAATATC
TCGTCGGNAGGGAAAAAACTGGATTATATTTCATCGCTATTATTAATCAT
TCTATTCATAGGGGTTAGGTAGCTCTNTAATGCCNNTAGGTAGACTTAGN
GGTATGTTTCACTCTCTTCATCGGGTATCTTAGGTAGAGTAACTATACGT
ATGATAGAGCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_p22.b1 MSMg01no162_p22.b1 CHROMAT_FILE:
MSMg01no162_p22.b1 PHD_FILE: MSMg01no162_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:29 2005
         (269 letters)



>mm_chr8_84148057_84148725
          Length = 669

 Score =  497 bits (257), Expect = e-145
 Identities = 263/265 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctgggcaacagttaaacattaagcaatcattactggctccaaatctctgtact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaattccctgggcaacagttaaacattaagcaatcattactggctccaaatctctgtact 410

                                                                       
Query: 65  aattttcttcagcctaattagcaacatttggcaaaagaataattgtcttcatcctgtgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aattttcttcagcctaattagcaacatttggcaaaagaataattgtcttcatcctgtgga 350

                                                                       
Query: 125 tcactagcttgatcactagcgtgttgaagagagtgagcggcaaacgggtcatcagcagac 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 349 tcactagcttgatcactagcgtgttggagagagtgagcggcaaacgggtcatcagcagac 290

                                                                       
Query: 185 actgagtatatatcccttctattcctcgggaaatctaaggagcatgcaagttaagtggct 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 289 actgagtatatatcccttctattcctcgggaaatctaaggagcatgcaggttaagtggct 230

                                    
Query: 245 tggctggggacagtgtcccaagtgt 269
           |||||||||||||||||||||||||
Sbjct: 229 tggctggggacagtgtcccaagtgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)