BAC Information

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BAC

Clone NameMSMg01-163C22
Chromosome8 (Build37)
Map Location 98,297,364 - 98,297,649
singlet/doubletsinglet
Overlap geneCnot1
Upstream geneCx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6
Downstream geneLOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163C22.T7 (MSMg01no163_c22.b1)MSMg01-163C22.TJ (MSMg01no163_c22.g1)
ACCAG362073AG362074
length729725
length of high quality
(start - end)
315 (45 - 359)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no163_c22.b1 PHD_FILE: MSMg01no163_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:43 2005CHROMAT_FILE: MSMg01no163_c22.g1 PHD_FILE: MSMg01no163_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTAGTATTCACTTAGTATTTCAGTAATGGTTGCAGATGTTTGTG
AGCCACCATGTGGTTGCTGGGGATTGAATGCAGGACCTCTGACAGAGCAG
TCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCATACACACACACAT
ACATACACACACACACACACACACACACACACACACACACACACAGTTTA
AAAAGCAAAGAATCAAGGCCCGGCATGGTGGCACATTGCCTTTAATCCCA
GCACTTGGGAGGCAGAGGCAGATGTATTTCTGAGTTTGAGGCCAGCCTGG
TCTACAGAGTTTTTTTCTCCCANNAACAGGTCCACACAGAGAAACCCTGT
CTCGAAAAACCAAAACCACCCCATAAAAACAAAACAAAAACGAAGGGGGG
AGCAAAGAATCCAGCAGAGTCCTACAGGTCTGAGGTCAATTGTGCTGCCA
TGCAGATTCATCTCTCATTTTTTTTTCTAACAGACTTATTACCAAATCTA
TAATAGGAAGTACCTTTGTTCCCACCACCCATTCGTTGGTTGATTTCCTT
CCTCAATATTCCCACATGCCCACTCATATGTTAAGCTTCCATTTCTGTTC
TATTGGAGATAAGTCTCATCTCTGCCCAGTTTGTGCCTTCTCAACAGAAG
GCATGCCTGAATAGCATACCACCTTCGTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAGGGCAAGACCAAAAATGACCTG
AAACAAGAAGGAGTTATATTAACAGAGTCAAATGTCTGCTTTAGCTACCG
TTTCTGCCCAGGACTGTCTTGAAACACTTACCTCCTGTACTTTACTTAGC
TTGAGAACTTTACTCAGCTGGGCAAATAAGTGGGGTGCAGGCTTTAAACT
CTGAAACGTAACAATTTTTAAAAAAGATTTAACTTTCATTTTTTTTAAAG
ATTTATTTATTATTATATATGAGTACACTGTAGCTGACTTCAGACACACC
AGAAGAGGGCATTTTTTCTCACCCNACATCCCCGTGAGCCACCATGTGGT
TGCTGGGATTTGAACTCACCACCTTTGAAAGAGCAGTCAGTGCTCTTAAC
CGCTGAGCCATCTCTCCAGCCCTTAACTTGCATTTTTATTTTGTTAAGGA
TGCAAATGTTTTACAGAGTTTTAATGTAGTTAGTTCATCTAATAATGGCA
CAATATACATACAACATGACTCTGGGTCACTACAAGCAATATAATATATT
CTAGAACTATAAACTGATACTTAATACTTGACCCAATCTGATGCCGGGCG
TGGTGGCGCACGCCTTTAGGCAGAGGCAGAAGGATTTCTGAGTTCGAGGC
CATCCTGGTCTATAGAATGAGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_c22.g1 MSMg01no163_c22.g1 CHROMAT_FILE:
MSMg01no163_c22.g1 PHD_FILE: MSMg01no163_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:43 2005
         (286 letters)



>mm_chr8_98297164_98297849
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagggcaagaccaaaaatgacctgaaacaagaaggagttatattaacagagtcaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagggcaagaccaaaaatgacctgaaacaagaaggagttatattaacagagtcaaatg 260

                                                                       
Query: 61  tctgctttagctaccgtttctgcccaggactgtcttgaaacacttacctcctgtacttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgctttagctaccgtttctgcccaggactgtcttgaaacacttacctcctgtacttta 320

                                                                       
Query: 121 cttagcttgagaactttactcagctgggcaaataagtggggtgcaggctttaaactctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagcttgagaactttactcagctgggcaaataagtggggtgcaggctttaaactctga 380

                                                                       
Query: 181 aacgtaacaatttttaaaaaagatttaactttcattttttttaaagatttatttattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacgtaacaatttttaaaaaagatttaactttcattttttttaaagatttatttattatt 440

                                                         
Query: 241 atatatgagtacactgtagctgacttcagacacaccagaagagggc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatatgagtacactgtagctgacttcagacacaccagaagagggc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)