BAC Information

Click to search

BAC

Clone NameMSMg01-163D24
Chromosome8 (Build37)
Map Location 61,806,343 - 61,806,638
singlet/doubletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163D24.T7 (MSMg01no163_d24.b1)MSMg01-163D24.TJ (MSMg01no163_d24.g1)
ACCAG362121AG362122
length748750
length of high quality
(start - end)
704 (45 - 748)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no163_d24.b1 PHD_FILE: MSMg01no163_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:48 2005CHROMAT_FILE: MSMg01no163_d24.g1 PHD_FILE: MSMg01no163_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCTTAAATATTTTCGGTTAAGAGCTTTTTATCCTTTGCATTTTCT
TTGACCAATATGTCAATATTTACTATGGTATCTTCTATATCTTCAATTCT
CTCTTCCATCTCTTGTAATCTGTTGGTGATGATTTTATCTGTATCTCCTG
ATGTTTTTCCTAAGTTGTCCATCTACAGAGTTGCCTCCCTTTGTGTTTTA
AAAATTCAGTGAAAAACTCCAGTCTTTTAAAGATAATTTTATAATCCAGT
CTCTTTTAAAATACAGTTTTTGTATAATTCTAAAACCTCTTTAAAAGTCC
AAAGTCTCTCAACTGTGGCATCCTGTAAGTTCAAAAATAAGTTAAGTGCT
TTCTTACTTCAAAAGAGAACAATCAGGGACAATTACAATCTGAACAAATC
AAAATTAAACTCCCGAAGTGTAAATAACTTTATGTTCAACTTTCTAGGAT
TCATTCACAATCTTTTGGCATTCTTCAGGTGGTTTGGGTTACTTCTCTGA
TTCTTATGTCTGTATCAAACATAGCTTTTAGCAGGCTCCACCCCACTTTT
TCTGCTATTCTTGGTAGCTGACCTCTGTTTCTGGCATCTTTAAAATGATG
GTATCTTCTGCTGCATCTGGGCTGCATTTTCTTCATTAGCCACATATAGG
CTCTCTTCATGGGACCATGTCTCAACTTCTCTTTATATTAACTTCAAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCACTGAGCACATTGATAATTTGTG
CTTGGAACTCTGACTCTTAGAAACTCTGTGGTAACTTGTTTATTCTATAA
CCTCAAGTTTATGGAAATTTGTCATACAGAAGTAGAATGTGTTAGGAAAG
AAAAGTTGTTCTAAACTTATGCAAGGAGAAAATGTGAAATCTTACTAGGT
ATTCTCTTTGAATGCACTATTCAAAAAAAAAAACCAAAACAAAACAAATG
GACTATCAAATTAAAATCAATATATATATAACCTATGTAAAGCATGTTTT
ACTGAAATCAAGTTTGTTGTAACACCCCCCCGCCAAGATTTTTTTTTTCA
TTTTGAATTTTTCAGGTACGCCTTCTCCTTAACTGTCCTGGAACTAGCTC
TGCAGACCAGACTGGCCTTGAAATTACAGAAATCTGGTTGCCTCTGCCTC
CCAACTAATGGGAAATATGTTGTGCACTACCACCATCTGATATAGAGTTT
TATATTGGGTCTAATCCATGCCATCACGGGACCATCATAAATGACCACGT
CAGTGCTTCTGAAGAGGGGCCTGCTTGCTGTACAGGTAGCCAACTTCCAA
TTCTAAATCTCATTTGAGATTTTAGTAAGACTTGTAAGATTTTAACATTA
TTTTGAAGTCTGTGAGCCCATTATGCCTATAAAATGACTAACCAGCCTCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_d24.g1 MSMg01no163_d24.g1 CHROMAT_FILE:
MSMg01no163_d24.g1 PHD_FILE: MSMg01no163_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:49 2005
         (287 letters)



>mm_chr8_61806143_61806838
          Length = 696

 Score =  507 bits (262), Expect = e-148
 Identities = 284/296 (95%), Gaps = 9/296 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcactgagcacattgataatttgtgcttggaactctgactcttagaaactctgtggtaa 60
           |||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agcactgagcacattgataactcgtgcttggaactctgactcatagaaactctgtggtaa 260

                                                                       
Query: 61  cttgtttattctataacctcaagtttatggaaatttgtcatacagaagtagaatgtgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtttattctataacctcaagtttatggaaatttgtcatacagaagtagaatgtgtta 320

                                                                       
Query: 121 ggaaagaaaagttgttctaaacttatgcaaggagaaaatgtgaaatcttactaggtattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagaaaagttgttctaaacttatgcaaggagaaaatgtgaaatcttactaggtattc 380

                                                                       
Query: 181 tctttgaatgcactattcaaaaaaaaaaa-----ccaaaacaaaacaaatggactatcaa 235
           |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||
Sbjct: 381 tctttgaatgcactattcaaaaaaaaaaaaaaacccaaaacaaaacaaatggactatcaa 440

                                                                   
Query: 236 attaaaatcaatatatatata----acctatgtaaagcatgttttactgaaatcaa 287
           |||||||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 441 attaaaatcaatatatatatatataacctatgtaaagcatgttttactgaaatcaa 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 696
Length adjustment: 9
Effective length of query: 278
Effective length of database: 687
Effective search space:   190986
Effective search space used:   190986
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)