BAC Information

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BAC

Clone NameMSMg01-163L22
Chromosome8 (Build37)
Map Location 54,759,393 - 54,759,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676688, Aga, Neil3
Downstream geneLOC100040107, Vegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163L22.T7 (MSMg01no163_l22.b1)MSMg01-163L22.TJ (MSMg01no163_l22.g1)
ACCAG362453AG362454
length743745
length of high quality
(start - end)
319 (48 - 366)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no163_l22.b1 PHD_FILE: MSMg01no163_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:24 2005CHROMAT_FILE: MSMg01no163_l22.g1 PHD_FILE: MSMg01no163_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAACTAAGGAATCTCAGATGGCCAAGAAGCACTTGAAATGCT
CAACATCCGTAGTCATCAGGGAAATGCAAATCAAAATGACCCTGTGATTC
CATCTTACAGCAGTCAGAATGGTTAAGATTAAAAGCAGCACATGATGGGG
AGGATGTGGGGGAAAAAGAAAAAGAACTCTCTTTTATCTCGGGTGGGATT
GCAAATATGGACAATCACCTTGAAAGTCAATCTAATGGTTTCTCTGAAAA
CTGAAAGTAGTTTTACCTGAAGACCATCTGTACCAGTCCTGGACATATAC
TGTATATAATGCCTGTTCTTTCACCACCCCCCCGCTCACACAGCATTACC
TATAGATGGTGTTAGGTTTCTGTTATATATATACCCTAGGATCCTGAACA
TCCATTCCATGTAGATCCTAGTCCAAAGATTGATTACAAATGATATGGTC
ATAATCAGCATAGTATCCTTCATAATAATTAGGAATGCATAAGCAATACT
ATGAATTGAGATCATAAATATAATCCTGAAAAATAGCCAAATGTCACTGG
TGTATAGATAGCCAAATTGCAGTTCATAATGTTATGTGATTATTTTCTAA
AAATTGAAATATTAATTTAAGAATTCCAAGAATCTAGTANAATTTACAAG
ACTCAAGGATTCAGATAGTGATAAGATGAGCAAGATCCTTCTN
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCAAAACGTCTTCAGTCAGGTTT
CCACTTTCTTTTGGGACATATTCCATGACATGTGAGGCATGGCAAGGTTT
GCATTCAATTTATGTTGTCATTTAACAAATCTAGGAACAGACTCTGTATC
TGATATCTGGCTGTCAGTTTGTGGCTGTGAGAGATCATAATAGATGTTCT
GTAATCTTCTACTCATGCCTTGAGCTGAGAATTTAAAACTCCAAACTGGT
CGTTTCCTGCCCTCCCCCTGCCGTTCTTCTTTCTTTTTAAACTTCTCGTA
TAATGAGAAATATTTTTTATTTCCCCCCCCCCCATTCCCTCCATAATGGT
CTATCACAGGAGTCATTTCATCTGTCAAAACCTTTCCTTGGACAGGCAGT
TTATTTCAAGTGACTGAAGGTGATAATATGAGTAACTGTGTGCTGTGGGC
TACGTGTTTTCCATTTTTTAATGGCATTGGGATCATTCTTGTTTAAAAAA
AATGGATTTTGCAACCATTCTCTAGTTCCCATCTGTGAAGATTTTTTGTT
TGTTTGTTTGTTTATTAACTACTGCTAGTCTTAATATAGGTCAGAACTCA
ATGTAAAAATAAAGTTTAGTATAAATATTCTTGAAGAGAGAGATTAAATA
GAANAATAGAAAATACCCCTTCTATTAGGAGATAATGATTAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_l22.g1 MSMg01no163_l22.g1 CHROMAT_FILE:
MSMg01no163_l22.g1 PHD_FILE: MSMg01no163_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:24 2005
         (284 letters)



>mm_chr8_54759193_54759876
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccaaaacgtcttcagtcaggtttccactttcttttgggacatattccatgacatgtga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 caccaaaacgtcttcagtcaggtttccactttcttctgggacatattccatgacatgtga 260

                                                                       
Query: 61  ggcatggcaaggtttgcattcaatttatgttgtcatttaacaaatctaggaacagactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcatggcaaggtttgcattcaatttatgttgtcatttaacaaatctaggaacagactct 320

                                                                       
Query: 121 gtatctgatatctggctgtcagtttgtggctgtgagagatcataatagatgttctgtaat 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gtatctgatatctggctgtcagtttgtggctgcgagagatcataatagatgttctgtaat 380

                                                                       
Query: 181 cttctactcatgccttgagctgagaatttaaaactccaaactggtcgtttcctgccctcc 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 cttctactcatgccttgagctgagaatttaaaactccaaactggtcctttcctgccctcc 440

                                                       
Query: 241 ccctgccgttcttctttctttttaaacttctcgtataatgagaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgccgttcttctttctttttaaacttctcgtataatgagaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)