BAC Information

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BAC

Clone NameMSMg01-163P02
Chromosome8 (Build37)
Map Location 76,466,792 - 76,467,072
singlet/doubletsinglet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163P02.T7 (MSMg01no163_p02.b1)MSMg01-163P02.TJ (MSMg01no163_p02.g1)
ACCAG362584AG362585
length739745
length of high quality
(start - end)
694 (46 - 739)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no163_p02.b1 PHD_FILE: MSMg01no163_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:39 2005CHROMAT_FILE: MSMg01no163_p02.g1 PHD_FILE: MSMg01no163_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTATTACCTACAGTGACAATCTTTACCAATAGAATACAAGAGT
AGGAAGACAGGCCCTCAGGTGTTGAAGGTACAATAGAAGAAATGGATACC
TTAGTCAAAGAAATGTTAAATCTAAAACATACTTGACATAAAACATTCAG
GATATCTGGGACATGATGAAAGGAACTAAGAATAATGGAAGAGAGGAAGG
AAAATAATCCTAGCTCAAAGGCCTCAGATAAGAACAGGTGCAGAGACATG
CATAATGCCTGAACTTATACAGAAAGAATAGACTAAATTGGAGGTCTCTA
TTAAATCCCTTCCATCAGACCTCAGGGAATCCCATGAAGAAGAAGCAGAA
ATATTTTATGAGTCAGGGGTGATGAAGGACACCAGGAGAACACAACCCTA
ATCAACTACACAAGGTGCTTATGAGCTCATAGACATTGAAGCATTAAACA
CAGGACCTCTGCATATATATTATAGCTATAATAATATATAATATTATATA
ATATGTAATACCATATTATAATACATAATATATATGATACATTATGTTAA
TATGTTATACTATATATGTAAATATATAATATGTAGTATATCATGTGCAT
TAGCATGTATGTTATATATTATAGCTATTAGTTTAGTATTTTTATGGGAC
TCCTGACTATGAGATCCAGTAGGTCTCTGACTCTCTTGN
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTATCTAAAGTTTGTTGTCACTT
CTTCCTGACTTAAAATTTGATCTCTAACACCAAATTGTCAGAACTTCTCA
CCGGTACTTATTCAAGCATCCGAACTGACCTGCTGGCAGCCAAGAGATTC
TATCTATTATCTATACTGGACCCTGTCCCTTGCTAAAACAGGGTACTACT
CTCATGCTTTGGCTCAGATCAGCTCCAGTCCTAGGTATCATAGAGCTGAA
GAGAAAGCTCTAAAGGTAGAAAATAGCAAATGTACTTAACTTTAAGTTTG
GGGGGGGGTATTTTAAAACACCTCTCGCCCCCAAAGAGGAAATAGAAAAG
AGAAAATTTCCATCAATGTCAGTCCTAATAAGAGTGGTGGCAGCCAATGC
GCTAGGTAATGAGAAGAATTAAATGGAAGATAATTGATGCTTGGCATTAT
GCTTTTTCAGTCTAAGGTTTCTTTAGTTGTATGCTAATATGATGTTACTT
TTTAAAAGTGGGAGTATGTTTGTGAGACCAGAAACCATTTGTACAAACTT
GGGAATATTCAATATACCCAGATATGTCCAGCCCAAAGGACACACAGATG
TGGGATTCTGATAGAGTACTATAAGAAAGGGGAAGTTGAATTCCCAAGGT
TCTAGAAATGATATGTGCCCCAATTCTCAGCATCCAAGCAAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_p02.g1 MSMg01no163_p02.g1 CHROMAT_FILE:
MSMg01no163_p02.g1 PHD_FILE: MSMg01no163_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:39 2005
         (282 letters)



>mm_chr8_76466592_76467273
          Length = 682

 Score =  497 bits (257), Expect = e-145
 Identities = 275/281 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttatctaaagtttgttgtcacttcttcctgacttaaaatttgatctctaacaccaaat 60
           ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 481 atttacctaaagtttgttgtcatttcttcctgacttaaaatttgatctctaacaccaaat 422

                                                                       
Query: 61  tgtcagaacttctcaccggtacttattcaagcatccgaactgacctgctggcagccaaga 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtcagaacttctcactggtacttattcaagcatccgaactgacctgctggcagccaaga 362

                                                                       
Query: 121 gattctatctattatctatactggaccctgtcccttgctaaaacagggtactactctcat 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtttctatctattatctatactggaccctgtcccttgctaaaacagggtactactctcat 302

                                                                       
Query: 181 gctttggctcagatcagctccagtcctaggtatcatagagctgaagagaaagctctaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gctttggctcagatcagctccagtcctaggtatcatagagctgaagagaaagctctaaag 242

                                                    
Query: 241 gtagaaaatagcaaatgtacttaactttaagtttggggggg 281
           ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 241 gtagagaatagcaaatgtacttaactttacgtttggggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)