BAC Information

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BAC

Clone NameMSMg01-164C17
Chromosome8 (Build37)
Map Location 72,360,982 - 72,361,270
singlet/doubletsinglet
Overlap genePbx4
Upstream geneLpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4
Downstream geneCilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164C17.T7 (MSMg01no164_c17.b1)MSMg01-164C17.TJ (MSMg01no164_c17.g1)
ACCAG362733AG362734
length755743
length of high quality
(start - end)		215 (385 - 599)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no164_c17.b1 PHD_FILE: MSMg01no164_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:56 2005CHROMAT_FILE: MSMg01no164_c17.g1 PHD_FILE: MSMg01no164_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTAGAGTCCACCTTCTTGAGTCCTTTATATATATTGGATATTAGTCCCC
TGTCTGATTTAGGTAAAGATCCTTTCCCAATCAGTTGGTAGCCTTTTTGT
CTTAATGACGGTGTCTTTTGCTTTACAGAAGCTTTGCAATTTCATGAGGT
CCCATTTGTCAATTCTCAATCTTACAGCACAAGTCTTTGCTGTTCTTATT
CAGGAAATTTTCCCCTGTGCCCATATCTTCCAGGTTTTCCCCACTTTCTC
CTCTATAAGTTTCATGTGTCTCTGCCCCCCATGTGGAGCTCCTTGATCCA
CTTAGATTTGACCTTAGCACCAGGACATAGGAATGGATCAATTCGCATTC
TTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTTTTTTCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTATGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCGCTATACCAGTACCATGCAGTTTTTATCAAAATTGCTCT
GTAGTAAAGCTTTAAGTCAGGCATGGTGATTCCCACAGAGGTTCTTTTAT
CCTTGAGAAGAGTTTTTGCTATCCTAGGGTTTTTTGTATACCAGAAGAAT
TTTTG

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTGTGAACACTGGCCACCTCGGGCCACCA
GAATCTCAAATCTGGGGTTGTGCTGGGTCACAGATGCCTGAGGCCCACAC
CCGGGCAGAGCACAGCTCTCAGCAGCTCTTTCCAGAACAGGTCACAGCTA
GTTCCCCAGGACACACCCAAGTGTTCCTTTAGTAGTGCCCATCCTTGGGG
TCCATCTTTTCTCTCCTCAGAGCCTACTCTTCCAGCCTAGTGGTTCTCTA
CTTTCCTAATGCTCGACCCTTTAGTAGAGTTGGTGACCCCCACCATTAAA
TGATTTTCTTTGTTATTCCCCCCCCGCCATGTTTCTACTGTTATGGGTCA
TCATGTAGATAATCTGGTGATCAACCCACAGGTTGTTTTAGACTCTCTTC
ATTGGCATTTTACCAAGTGCCTAATACCAGTCACTATGAGAAGTCGACGA
ACAACAAAGGCCCTCTTAGAGATTAACCAAAGGGCACCCCCAGGAAAGAT
GTTCCTGCCCTGGCTTCAGTTTCCTCTTTGGAGCACCGGAGTCACCACTG
ACTGTCCAGCACCTGACTGGTGCTCAGAGAACAGGAAAGAGGAAGGTAGG
GCTGTGAGAGGAGACATACAATATATGTGTTGAGCATATAATGTAGAGAT
GTAGGCAAACCCGGGGCTGCTGTGTGGAATACTGGCTGGGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_c17.g1 MSMg01no164_c17.g1 CHROMAT_FILE:
MSMg01no164_c17.g1 PHD_FILE: MSMg01no164_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:56 2005
         (291 letters)



>mm_chr8_72360852_72361542
          Length = 691

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgtgaacactggccacctcgggccaccagaatctcaaatctggggttgtgctgggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctttgtgaacactggccacctcgggccaccagaatctcaaatctggggttgtgctgggtc 360

                                                                       
Query: 61  acagatgcctgaggcccacacccgggcagagcacagctctcagcagctctttccagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acagatgcctgaggcccacacccgggcagagcacagctctcagcagctctttccagaaca 300

                                                                       
Query: 121 ggtcacagctagttccccaggacacacccaagtgttcctttagtagtgcccatccttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggtcacagctagttccccaggacacacccaagtgttcctttagtagtgcccatccttggg 240

                                                                       
Query: 181 gtccatcttttctctcctcagagcctactcttccagcctagtggttctctactttcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtccatcttttctctcctcagagcctactcttccagcctagtggttctctactttcctaa 180

                                                            
Query: 241 tgctcgaccctttagtagagttggtgacccccaccattaaatgattttc 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tgctcgaccctttagtagagttggtgacccccaccattaaatgattttc 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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