BAC Information

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BAC

Clone NameMSMg01-165F18
Chromosome8 (Build37)
Map Location 113,620,054 - 113,620,483
singlet/doubletsinglet
Overlap gene4930402E16Rik
Upstream geneGm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl
Downstream gene9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165F18.T7 (MSMg01no165_f18.b1)MSMg01-165F18.TJ (MSMg01no165_f18.g1)
ACCAG363545
length720737
length of high quality
(start - end)
---450 (69 - 518)
definitionCHROMAT_FILE: MSMg01no165_f18.b1 PHD_FILE: MSMg01no165_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:29 2005CHROMAT_FILE: MSMg01no165_f18.g1 PHD_FILE: MSMg01no165_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATAC
CAGGTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXX
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCCCTGAGAAACCCTACCATTCCCAGTCCTT
TGTCACTGTTTGCTCAATAAACTTATGATCTCTCGGCAAGACAGGAAGAA
AAGGACAAACAGGAGATTCAGGAAAGAACAAAGCACGTTTAATGCCCAGT
CTGATAAGGCCAAGAAAAGAATGTTGACTCTGTGATCATCATGACCTTCA
AGAGTGAAGAGATGAGGGCAGAAAAGACTGAAGTATACCAGGAAGGGAGG
GCTAGAGAGATGTCTCAGTGGTTAAGAACGTTACTGTTCTTGCACAGGGC
CTGGGTTTGATTCCCAACTCCCACAAGGAGGTAACAATCTTTAACTTCAG
TTCCAGTGAATCCAATGCCTTGACTTTTGTGGATATCAAGCGTGGACATG
GTGCACAAACGTACACATAGGCAAAACACTCATAAAATAAAATGTGATAT
ATATATATGTGTGTGTGTGTGTGTGTGTATGTATATATGTGCGCCTCACC
TATCATACCACTCTTCCCTTATCATTATCATTCTTCTTTTTCTTCCGTTT
TTTCCTTATTTATCTTCATCTCTTATTATTCCAATACTCCCTATTTCTTC
TCCTTCTTACTCACTTCTTTCCCTCATTCCTCCCTCCGCACCCCCTATCG
TTTCTCTATTCATTCCATTTTTCCATTCTCATCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_f18.g1 MSMg01no165_f18.g1 CHROMAT_FILE:
MSMg01no165_f18.g1 PHD_FILE: MSMg01no165_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:29 2005
         (450 letters)



>mm_chr8_113620054_113620903
          Length = 850

 Score =  816 bits (422), Expect = 0.0
 Identities = 428/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccctgagaaaccctaccattcccagtcctttgtcactgtttgctcaataaacttatga 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctccctgagaaaccctaccatgcccagtcctttgtcactgtttgctcaataaacttatga 371

                                                                       
Query: 61  tctctcggcaagacaggaagaaaaggacaaacaggagattcaggaaagaacaaagcacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctctcggcaagacaggaagaaaaggacaaacaggagattcaggaaagaacaaagcacgt 311

                                                                       
Query: 121 ttaatgcccagtctgataaggccaagaaaagaatgttgactctgtgatcatcatgacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttaatgcccagtctgataaggccaagaaaagaatgttgactctgtgatcatcatgacctt 251

                                                                       
Query: 181 caagagtgaagagatgagggcagaaaagactgaagtataccaggaagggagggctagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 caagagtgaagagatgagggcagaaaagactgaagtataccaggaagggagggctagaga 191

                                                                       
Query: 241 gatgtctcagtggttaagaacgttactgttcttgcacagggcctgggtttgattcccaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gatgtctcagtggttaagaacgttactgttcttgcacagggcctgggtttgattcccaac 131

                                                                       
Query: 301 tcccacaaggaggtaacaatctttaacttcagttccagtgaatccaatgccttgactttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tcccacaaggaggtaacaatctttaacttcagttccagtgaatccaatgccttgactttt 71

                                                                       
Query: 361 gtggatatcaagcgtggacatggtgcacaaacgtacacataggcaaaacactcataaaat 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gtggacatcaagcgtggacatggtgcacaaacgtacacataggcaaaacactcataaaat 11

                     
Query: 421 aaaatgtgat 430
           ||||||||||
Sbjct: 10  aaaatgtgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)