BAC Information

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BAC

Clone NameMSMg01-165H03
Chromosome8 (Build37)
Map Location 44,214,036 - 44,214,374
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165H03.T7 (MSMg01no165_h03.b1)MSMg01-165H03.TJ (MSMg01no165_h03.g1)
ACCAG363605AG363606
length722717
length of high quality
(start - end)
590 (65 - 654)339 (69 - 407)
definitionCHROMAT_FILE: MSMg01no165_h03.b1 PHD_FILE: MSMg01no165_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:36 2005CHROMAT_FILE: MSMg01no165_h03.g1 PHD_FILE: MSMg01no165_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTC
CTAAACCTGCCTAAACAACTTCAGCAAAGTGGCTGGATATAAAATTAACT
CAAACTAATCAGTAGTCTTAATGTACTCAAAGGATAAACAAGCTGAGAAA
GAAATTAGGGAAATGACATCCTTCACCATAGTCATAAACAATATAAAGTA
TCTTGGTGTGACTCTAACCAAACAAGTGAGAGATCTGTAAGTGGAAACCC
AGCCATAAAGAAGAATAGAATTATGTCACTCAAGAAAAAATAGATGGAAT
TGGAGATCATGATGTTATACAAAATAAGTCAAATTCAGCCAAACATTACA
TGTTTTTCTTCATGTGGTACATCTTGATTTAAATATGTGTATAAGATGAA
AGACTAAGGGGACCGATCTATGGGGCTAGAAGGTATGTAAAGGGAAGCAA
AGGTAAAGAGATCTGCAACCCTGTAGGTGCAACAACATTATGAACTAACC
AGTACCCTGGAGCTCTTGACTCTAGCTGCATATGCATCAAAAGATGACCT
AGTCAGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATAT
GCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAATGCGTGGGTAG
GGGAGTGCCCCTTTTCCCTCCTTCCCCTCTGCTTTTCAATCTCACCATAT
CCTTTTCTTGTTTCGCATATCT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAGTCAGTTCTGGTTATGCAGTGAGCTTGAG
GTCAGCCTGGGATCCATGAGACCTTGCTTCAGAAACAAAGCAAACCCTTT
ACTCAGCACGCAGAGCCCACATGACGTCAGCAACTGGGCTTTGTTCTAGA
GTTCCTGCTCATCACCTTCACTGACCTAAGTCTACTGTCTCTCTTACCCT
GACACATTTCAACTTGGTACCCCTGAAAGGCAGGGAACAGGTATGAGCCA
GGATTCAGATGCCAGACAACCCTCTCAGTTCTGTGTTTACATTTGCCTTT
CCATGCTGCAGCCAGAGGATAGATAATCAATGACTTGCAAACATTTTTGT
TTGTTTCTCATTTACTGTTAAACTAAATAGCTTTTATTTTTAAATTATTT
ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGACAC
GGTTTCTCTGTGTAGCCCTGGCTGCTCTGGAATTCACTCTGTAGGCCAGG
CTGGCCTCGAACACAGAGAGATGTTTCCCCCTGCCTCCTGAGTGGCTGGG
ATTGAAGTCACATGACAACAAGCCCACTTCCAATTTATGCTATCACCCTC
TTACTGAGGAACATGTAGTGTGTTTTCTATTTGTAGATATACCANATGTA
CCTAAGTCTTTGAGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_h03.g1 MSMg01no165_h03.g1 CHROMAT_FILE:
MSMg01no165_h03.g1 PHD_FILE: MSMg01no165_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:36 2005
         (339 letters)



>mm_chr8_44213765_44214503
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagtcagttctggttatgcagtgagcttgaggtcagcctgggatccatgagaccttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 agagtcagttctggttatgcagtgagcttgaggtcagcctgggatccatgagaccttgct 551

                                                                       
Query: 61  tcagaaacaaagcaaaccctttactcagcacgcagagcccacatgacgtcagcaactggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcagaaacaaagcaaaccctttactcagcacgcagagcccacatgacgtcagcaactggg 491

                                                                       
Query: 121 ctttgttctagagttcctgctcatcaccttcactgacctaagtctactgtctctcttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctttgttctagagttcctgctcatcaccttcactgacctaagtctactgtctctcttacc 431

                                                                       
Query: 181 ctgacacatttcaacttggtacccctgaaaggcagggaacaggtatgagccaggattcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctgacacatttcaacttggtacccctgaaaggcagggaacaggtatgagccaggattcag 371

                                                                       
Query: 241 atgccagacaaccctctcagttctgtgtttacatttgcctttccatgctgcagccagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atgccagacaaccctctcagttctgtgtttacatttgcctttccatgctgcagccagagg 311

                                                  
Query: 301 atagataatcaatgacttgcaaacatttttgtttgtttc 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atagataatcaatgacttgcaaacatttttgtttgtttc 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)