BAC Information

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BAC

Clone NameMSMg01-165I14
Chromosome8 (Build37)
Map Location 102,926,409 - 102,927,004
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165I14.T7 (MSMg01no165_i14.b1)MSMg01-165I14.TJ (MSMg01no165_i14.g1)
ACCAG363664AG363665
length7451,353
length of high quality
(start - end)		599 (38 - 636)74 (185 - 258)
definitionCHROMAT_FILE: MSMg01no165_i14.b1 PHD_FILE: MSMg01no165_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:43 2005CHROMAT_FILE: MSMg01no165_i14.g1 PHD_FILE: MSMg01no165_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
TTGTTCACCCAGTACTTTTGCTTTCCAAGGCTCAGGATTACTGCCTCCCC
ATCTGAGAAAACTTCCACTACAGAAAAAAAAATGGGGGCTCAGGAACCCT
CAACATATCTCAGATTGTCCCTCTTGGTCCCTCAGGGTGCCTTTTGTTGA
CAGAATTTTTCATCTTTCCTTACTAGATTAATTCTTTAACCAGTCAAGAT
ACCTCGTGAAAATTCTCTTGCTTCTCTAGAAAAACCAGGTGGTCATAGTT
ATTGTAAAATAAAATATGCTATATTTTAATGGTTTTCAGTTAGTATTTTA
AAAGTCTTTTATATTTCTATTAAATATCCCAGTATAGGATCAGGGACCCA
GAGTTTATTACCCGAAAGAGCTGCATTTTGAGAATGTATTTTGAATACCT
AGAGTAAAGTTTAAATTTCCTCAAGCTTCAACTAAGATTACAGGACATTG
GACGTATTTTATTGTTGTTCCACATCACTTAATATTCAAACACATAATTT
CTTATTCAGGGTTTCTATTCATGCACAAAACATCATGTCCAAGAAGCAAG
TGGGGGAGGGAAGGGTTCATTCAGCTTACACTTCCACTTTGCTGTTCATC
AGGAAAGGATATAAGGATTGAAGCTCAAGCAGCTCAGAAAGTAGAAGCTC
ATGTAGAGGCCTTGAAGGGATGTGACTTAACGCCATGCTTCCCCT

TTTTTCCCNNNNAAGAAGGCAGCNTGGGGCGCCTGGNGCTGAXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTCCTTGATACAATGTCTTTC
TCTGTACCAATATCATGACGTTTTTATCCCCATTGCTCTGTAGTAAAGCT
TGAGGACCGGAATGGTGATTTCCCCCACTGGTCTTTTATTGTTAAGAATT
GTTTTGGCTATTCTGTTTTTTGGGGATTTTTGTTTGTTTGTTTGTTTTGT
TTTTTTGCTTTTCCGCCCCCCCCCCCCCCCCCNTTCCCTCCCTTCCCCCC
CCCCCCCCTCCCCCTCCCCTTTCTCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCTTCCTCCCCTCCTCCCCTCCTCCCCCCCCCCCCCTTTTTTTTTTCC
CCTCCCCCCCCCCCCCCCTCCCTTCTGGGGGCGGCCCCCCCCCCCTTCTT
TTTCTTCCCCCCCCCCTCTTCCCCTCCCCCCCCCCCCCCCCAAAACCACC
CTCCCTCCCTTCCGTCCCCTCCCCTCCCCCCCCCCCTCCCCCCCCTCCCT
TCCCTCTCTCCCTTCCTCCCCCCCCCTCCCCCCCCCCCCTCCCCTCCTCC
CTCCCCCCCCCCCCCCCCCCCCTCCCCCTCCTCCCCCTCCCCCCCCCCCC
CCCCTTCCCCCTCCCCCTCCCTCCCCCCTCCCTCCCCCCCCTTCCCCTCC
CCCTCTCCCCCCCTTCCCCCCCCCCCCCTCCCTCCCCTTCCCCCCCCTCC
CCCCTCTCTCCCCCCCCTCCCTCCCCCCCCCCCTCCCCCTCCCCCTCCCC
CCCCCCTCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTCTCCCCCTCCCCC
CCCCTCCCCCTCCCTCCCCCCCCCCCCCCCCCCCCCCTCTCCCTCCCCTC
CTCCTCCCCCTCCCCCTCCCCCCCCCTCCCCTCCCCCCCCCTCCCCTCCC
CTCCCCCCTCCTCCCCTCCTCCTCCCTCTCTCGCCCCTCCCCCTCCCCCC
CCCCCCCCCTCCCCCCCCTCCNCTCCCTCCCTCTCCCCCTCCCCCCTTCC
CCCCCCCCCCCCCCCCCCCCCCCCCCTTCTCCCCCCCCTCCCCCCCCCCC
CCCCCCCCCTCCCCCCTCCCCTCCCTCCCTCTCCCCCCTCCTCCCCCTCC
CTCNCCCCCCCCCCCCCTCCCCCCTCTCCCTCCCCCTCCCCTCCCCTCCC
TCTCCTCCCCCTCCNCCCCCTCTTCGTCCCCTCCTTCCCCCCCCTCTTTC
CCCCCCCCTCTCCCCTCCCCCCTCCCCCCCCTTCCCCCTCCTCCCTCCTC
CTCTCCTCCCTCCCCCCTCCCCCCCTCTCGTCNTCTTCTCTCCCCCTTCC
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_i14.b1 MSMg01no165_i14.b1 CHROMAT_FILE:
MSMg01no165_i14.b1 PHD_FILE: MSMg01no165_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:43 2005
         (599 letters)



>mm_chr8_102926206_102927204
          Length = 999

 Score = 1114 bits (576), Expect = 0.0
 Identities = 591/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttttgttcacccagtacttttgctttccaaggctcaggattactgcctcccc 63
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattctttttgttcacccagtacttttgctctccaaggctcaggattactgcctcccc 263

                                                                       
Query: 64  atctgagaaaacttccactacagaaaaaaaaatgggggctcaggaaccctcaacatatct 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 atctgagaaaacttccactacagaaaaaaaaatgggagctcaggaaccctcaacatatct 323

                                                                       
Query: 124 cagattgtccctcttggtccctcagggtgccttttgttgacagaatttttcatctttcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagattgtccctcttggtccctcagggtgccttttgttgacagaatttttcatctttcct 383

                                                                       
Query: 184 tactagattaattctttaaccagtcaagatacctcgtgaaaattctcttgcttctctaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tactagattaattctttaaccagtcaagatacctcgtgaaaattctcttgcttctctaga 443

                                                                       
Query: 244 aaaaccaggtggtcatagttattgtaaaataaaatatgctatattttaatggttttcagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaaccaggtggtcatagttattgtaaaataaaatatgctatattttaatggttttcagt 503

                                                                       
Query: 304 tagtattttaaaagtcttttatatttctattaaatatcccagtataggatcagggaccca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagtattttaaaagtcttttatatttctattaaatatcccagtataggatcagggaccca 563

                                                                       
Query: 364 gagtttattacccgaaagagctgcattttgagaatgtattttgaatacctagagtaaagt 423
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagtttattacttgaaagagctgcattttgagaatgtattttgaatacctagagtaaagt 623

                                                                       
Query: 424 ttaaatttcctcaagcttcaactaagattacaggacattggacgtattttattgttgttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttaaatttcctcaagcttcaactaagattacaggacattggacgtattttattgttgttc 683

                                                                       
Query: 484 cacatcacttaatattcaaacacataatttcttattcagggtttctattcatgcacaaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacatcacttaatattcaaacacataatttcttattcagggtttctattcatgcacaaaa 743

                                                                   
Query: 544 catcatgtccaagaagcaagtgggggagggaagggttcattcagcttacacttcca 599
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 catcatgaccaagaagcaagtgggggagggaagggttcattcagcttacacttcca 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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