NGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCGGTCTTAATCCTTAAGAAGCCAGGCCTAACCTAATAAA
TACTATTTGGTTCTCTTTTCTCTCACCTTGAAGCCATGAGTGCTCTGTGC
TTGGTGTCTCTATGACATTCCCAGAATCCTTGAGGTTCTCGTCCACCAGA
TAACTTACAAGAGGTAAGAATATGGGCCAACAGCCTAGAAGCCAGGAGCA
GCTTTCTTGAATGGATTTATTGTCAAGGCTTAGAGAGATTTCCTGTTGTT
ACCCTTGCCAACATTTAAGTGTTATATTTTATTTTGTTCTTTCTGTTGAA
GCTAGCATGGTCATAGCCCCAAACCATGCCCCAGGACCTGCACAACTATA
AACACAAGAAAGGGGTTGCACCACCTTCCATTTGTTCTATAAATTCAGAG
AGCCCTATAGGGATGCCCAAGATCAACAGCGCCCTTACTATCTTTCTCTC
ACCTCTTCTTTGCCAGCTTCCATTGCCTCACATTTGCCTCTTCCTTTGTT
CATCTTCCTGTTGAGGCTCTTAGCTACTTGAAATTCATCATCTCTTCTCA
TGTCCCATGCTGACCTAAATAATCCCACCGCCAGGACAAGTTTATTGGTT
ATATTTTGCCGACCTATTCTTTGCGCTTAAAATGAATCCCAGAACTCAAC
AAAACCCCTTTGTCACACCGTTTTATCCTCTCTCCTGTCATTG

NNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAATATTTCTATTGATT
ATATTTCTATTTTCAGGTAGTGAACTGTTTTATTCATTCATTCAATTCAC
TTACTAATTTCTACTCTTTGTTTTTTCATTGATTTCTTTGAGGCACTTAT
TCATTTCCTCCTCAAAGACTTCTATCACTTTCCTAATGGTGATTTTAAAG
TCTTTGTGTTGTGTTTTAGTTATATTGCATTTCTCAGGGCCTGATGTGAT
AGTATTGCTGGGCTCTAGTGGAGACATAATTTACTGAATGTCACTATGCT
ATCATCTAGGCAACATGATTGTTAAATGCATTTTGGTTGGATGTATTGCA
GTGTTTCTTATAGCGTCCCCCCCGCCACAGAGCATAGCTCTTCCCATTTC
GTATTTTGATGTGACATTCTCAGCACTCATGATTATAAAATCAAAGAATC
TACCAACTTAAAGAAAATGACAAGGCTTTGTATCCAGAAGTATCATATAT
TTAGCCTAGATTTAATCCCTTTTTTAAAAAAAAGCTCTTTGAACATATTG
GACGACGCATTTTGGATACCTTATTTTCTTGCAATTTCCCAAANCGCCTC
GCCCTTCTGTATTAATTTAATTTTGGGGCAAATTTTATAATCCTCCATCC
GAATCTACGGCTGCCCCCCAACCGTCGCTAAAATTCCACTTCCCT

Query= MSMg01no166_a07.b1 MSMg01no166_a07.b1 CHROMAT_FILE:
MSMg01no166_a07.b1 PHD_FILE: MSMg01no166_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:23 2005
         (515 letters)



>mm_chr8_78955464_78956378
          Length = 915

 Score =  920 bits (476), Expect = 0.0
 Identities = 503/512 (98%), Gaps = 2/512 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcggtcttaatccttaagaagccaggcctaacctaataaatactatttggttctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattcggtcttaatccttaagaagccaggcctaacctaataaatactatttggttctct 656

                                                                       
Query: 65  tttctctcaccttgaagccatgagtgctctgtgcttggtgtctctatgacattcccagaa 124
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 655 tttctctcaccctgaagccatgagtgctctgtgtttggtgtctctatgacattcccagaa 596

                                                                       
Query: 125 tccttgaggttctcgtccaccagataacttacaagaggtaagaatatgggccaacagcct 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tccttgaggttctcatccaccagataacttacaagaggtaagaatatgggccaacagcct 536

                                                                       
Query: 185 agaagccaggagcagctttcttgaatggatttattgtcaaggcttagagagatttcctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agaagccaggagcagctttcttgaatggatttattgtcaaggcttagagagatttcctgt 476

                                                                       
Query: 245 tgttacccttgccaacatttaagtgttatattttattttgttctttctgttgaagctagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgttacccttgccaacatttaagtgttatattttattttgttctttctgttgaagctagc 416

                                                                       
Query: 305 atggtcatagccccaaaccatgccccaggacctgcacaactataaacacaagaaaggggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 415 atggtcatagccccaaaccatgccccaggacctgcacaactataaacacaagaaaggggg 356

                                                                       
Query: 365 tgcaccac-cttccatttgttctataaattcagagagccctatagggatgcccaagatca 423
           ||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgcag-aggcttccatttgttctataaattcagagagccctatagggatgcccaagatca 297

                                                                       
Query: 424 acagcgcccttactatctttctctcacctcttctttgccagcttccattgcctcacattt 483
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 acagagcccttactatctttctctcacctcttctttgccagcttccattgcctcacattt 237

                                           
Query: 484 gcctcttcctttgttcatcttcctgttgaggc 515
           ||||||||||||||||||||||||||||||||
Sbjct: 236 gcctcttcctttgttcatcttcctgttgaggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)