BAC Information

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BAC

Clone NameMSMg01-166E05
Chromosome8 (Build37)
Map Location 115,121,186 - 115,121,688
singlet/doubletsinglet
Overlap geneCntnap4
Upstream geneZnrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166E05.T7 (MSMg01no166_e05.b1)MSMg01-166E05.TJ (MSMg01no166_e05.g1)
ACCAG364142AG364143
length790744
length of high quality
(start - end)
220 (49 - 268)503 (79 - 581)
definitionCHROMAT_FILE: MSMg01no166_e05.b1 PHD_FILE: MSMg01no166_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:42 2005CHROMAT_FILE: MSMg01no166_e05.g1 PHD_FILE: MSMg01no166_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAATGTCCTTAGAGGAGTTGGGAGATGGTGCTGTGAGTAA
GAGTGCTAATACAACCATGAGGAAGTGAGTTTGAGTCTCTAGCAGCCAAA
TAAAAAGCTAGACATGGCAGTGCACATCCCATTTGACCAAGTGCTAGGAA
AATGTAGAGCTAGGAGCATTACTCAAGCTTGCTGGGTAATGAGAGAGTAG
ATGATGAGATGGGATGCCTGTCACCCTTCTTTGTGTTACCCACCCCTATT
AATACATACAAGCCTCATGTTTTTTTTTTTTCATGTACTCACTCTTTCTC
TCACACTAACAACGACAACCCCCCCTTCCTTCTTACATACGCTACTATTC
TTAGTTTTCATTTCACCCCCCCTCTCACAGAACACATTCACTTCCACACA
AACCCTACCCCTCTCTCATTCCTTCATATGCCCCTACACCACTTGTTTAT
AATCACTCCCCCAATTCCACAAGTATACTCCCCAATTCCTCTGCAGCTCC
CTTTTTCCACTCCATCTTCGGTCTCCTTACCACAAACCGATCTATCTTCT
ATGTTTTTCTTTGACCTTTACCTTATATGTATCCATACTCCCCCTTCTTT
ATCGTTCAGATCCAATTTCCCTTACTTTCGCCTATTATATTGAGCCCGCT
CACCACTATTCATATTAATTGTTGCATTCCCATCCTCCATATTTTTGACA
ACATAGACTTTTTATTATCTCCACACTCACACTCTGTATC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCCGAGAACCCAGGAAAAT
TCCAGGTATTGTGGCATACCCTTGTAGTCCCAGCACTGGGAAGGCAGGAT
CCTGGGAGCTCACTAGCCAACCCAGTCAAACCTAATTGGTAAGCTTCAGG
CCCATAAGGGACTGCAATTCCTAGAAGAATTCCTGAGATGGCACCTGAGA
TTGTACCTCTGGTCATTTCATGCACACAGATTCACACACACTTGCACCTG
CGTGCACCCACTCACACTTACATATATGCATACACTCACACATTAAAGAA
ATAGAATACTGGTCAGATAATAAAGGGGGAATGTGGGACTGACAGCTTAA
TCAGCACAGAAATGACCCTTTATGGAAAATAAAAATATGCCCAAAGACTT
CAGCAAGAAATTTAAATTCTCTGACCTTCAGTGCAGAAAACGGGAAATGG
GCAGATGTTTTTCAAGGGGTTTGTGTAAGGATTTAACTGCTTGGGACATC
ATGTGAAGACCCATGATTATCATGGTGTGTTAGCCAGGGTTTAAATGCCT
ATAGGGATTACCACAAGGCCCTAGTGTAAGAAGACTTATTGGAACTCACG
ATTTTAGAGATGTCTGTTAGTGAGTCGCTAGAATTTATGCTAAGTTCACA
CTTTCATCCTTCCCTCGGCCCCTTCCTGTCGAGAGCTACGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_e05.g1 MSMg01no166_e05.g1 CHROMAT_FILE:
MSMg01no166_e05.g1 PHD_FILE: MSMg01no166_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:42 2005
         (503 letters)



>mm_chr8_115120986_115121888
          Length = 903

 Score =  942 bits (487), Expect = 0.0
 Identities = 499/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccccgagaacccaggaaaattccaggtattgtggcatacccttgtagtcccagcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccccgagaacccaggaaaattccaggtattgtggcatacccttgtagtcccagcactg 260

                                                                       
Query: 61  ggaaggcaggatcctgggagctcactagccaacccagtcaaacctaattggtaagcttca 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaggcagggtcctgggagctcactagccaacccagtcaaacctaattggtaagcttca 320

                                                                       
Query: 121 ggcccataagggactgcaattcctagaagaattcctgagatggcacctgagattgtacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcccataagggactgcaattcctagaagaattcctgagatggcacctgagattgtacct 380

                                                                       
Query: 181 ctggtcatttcatgcacacagattcacacacacttgcacctgcgtgcacccactcacact 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ctggtcatttcatgcacacagattcacacacacttgcacctgcatgcacccactcacact 440

                                                                       
Query: 241 tacatatatgcatacactcacacattaaagaaatagaatactggtcagataataaagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatatatgcatacactcacacattaaagaaatagaatactggtcagataataaagggg 500

                                                                       
Query: 301 gaatgtgggactgacagcttaatcagcacagaaatgaccctttatggaaaataaaaatat 360
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 501 gaatgtgggactgacagcttaatcagcacagaaatgaagctttatggaaaataaaaatat 560

                                                                       
Query: 361 gcccaaagacttcagcaagaaatttaaattctctgaccttcagtgcagaaaacgggaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcccaaagacttcagcaagaaatttaaattctctgaccttcagtgcagaaaacgggaaat 620

                                                                       
Query: 421 gggcagatgtttttcaaggggtttgtgtaaggatttaactgcttgggacatcatgtgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcagatgtttttcaaggggtttgtgtaaggatttaactgcttgggacatcatgtgaag 680

                                  
Query: 481 acccatgattatcatggtgtgtt 503
           |||||||||||||||||||||||
Sbjct: 681 acccatgattatcatggtgtgtt 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)