BAC Information

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BAC

Clone NameMSMg01-166O23
Chromosome8 (Build37)
Map Location 50,807,284 - 50,807,623
singlet/doubletsinglet
Overlap genenone
Upstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166O23.T7 (MSMg01no166_o23.b1)MSMg01-166O23.TJ (MSMg01no166_o23.g1)
ACCAG364599AG364600
length787760
length of high quality
(start - end)		316 (46 - 361)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no166_o23.b1 PHD_FILE: MSMg01no166_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:34 2005CHROMAT_FILE: MSMg01no166_o23.g1 PHD_FILE: MSMg01no166_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGCGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGTTTTTATCTTCAAGGCTCTTCCCCACT
TTCTCCTCTATAAGTTTCACTGCCCCTGGCTTTATGAGAAGTTCCTTGAC
TCATTTAATATGTTGTNCCCCCCCCCCCCCAAAAAAAAGAAAAAAAATAA
AAACTCCNCTACCCTTTACCTAATACTTTTGTCTTTTCCTTATTTATAAT
TATGTCAACCTATCTTCTACCGCCTGCTATTTTCTTCCCCATATTCCCTT
TACCCACTCTCATTTTTTCCAACCATCCCTTTACCTTTCTTCTACCAACA
TCTATTATATATTCTCTTCTTATACCCATTTCCTCATTTATTATATTTAT
CCCCCAATAAACACTTAATAATTCTTTATTTCATTCCCCTCCTTTTTTTT
ATACCCCCCCCCTTTCTTTATAATTCTTGTTGAGTCAACTCCTTTTTCCG
TCCCTCATTTTTTTTTTTTATACCTACACTCTTTTCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGTATAGAAATTACACCACA
AGGTGCAGAAACTATAGAGTGTGTTTCAGTGGGAAGGTAGAAGAGGACTA
AATGAGCTCATATCACAGTGAACAGCACATCCAAGTTCATCCCATTCCTA
TGTTTTGCCAACTTTTAAAACTTCTATTGACTTATCCATCCTGGGATGTA
TCCCTCACTGTATGAGAACGCCTATGCTCCAATTGTCTCTGGATATGTCT
GCACTGACATCCTCAGAGGTGCACTAAACTCTTAGATGCCTCTCAGTACA
GTCAAGGAAGATTGAGATAAGATTGGCCATAATAAAAGGAGACTTCTTAC
CTCCCAGGGTGGACTGCCCCCCCCCCCCACAGNGTTCCATTATATTATAA
ACCAAACACTGAACGTGGTCAGTCAGTGTTAGGTGTGTGATAGCCTCCAT
GTAGGATTATGGAGGACTGATTCTAGATATTCCCTCAGATAGAAAATAGA
ATATTTTCCTTCCCATCAACGCACTCACTACTGTTATAGTCTGATTTCCG
CGAATATATAACCGTTATCCCTCCCGCTCTTTAGTATGCCGCCTCCCCGC
ACACGCGCGACCACCTCCCAACATGTATATATTTACTCCCTCAAATATCT
CCCACCTACATTTTACAATTTTACACCACCCAAACTACTTCCAATATTGT
ATATTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_o23.g1 MSMg01no166_o23.g1 CHROMAT_FILE:
MSMg01no166_o23.g1 PHD_FILE: MSMg01no166_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:34 2005
         (346 letters)



>mm_chr8_50807084_50807829
          Length = 746

 Score =  627 bits (324), Expect = 0.0
 Identities = 336/340 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggtatagaaattacaccacaaggtgcagaaactatagagtgtgtttcagtgggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaggtatagaaattacaccacaaggtgcagaaactatagagtgtgtttcagtgggaag 260

                                                                       
Query: 61  gtagaagaggactaaatgagctcatatcacagtgaacagcacatccaagttcatcccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagaagaggactaaatgagctcatatcacagtgaacagcacatccaagttcatcccatt 320

                                                                       
Query: 121 cctatgttttgccaacttttaaaacttctattgacttatccatcctgggatgtatccctc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctatcttttgccaacttttaaaacttctattgacttatccatcctgggatgtatccctc 380

                                                                       
Query: 181 actgtatgagaacgcctatgctccaattgtctctggatatgtctgcactgacatcctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtatgagaacgcctatgctccaattgtctctggatatgtctgcactgacatcctcag 440

                                                                       
Query: 241 aggtgcactaaactcttagatgcctctcagtacagtcaaggaagattgagataagattgg 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 aggtgcactaaactcttagatgcctctcagtccagtcaaggaagattgagataagattgg 500

                                                   
Query: 301 ccataataaaaggagacttcttacctcccagggtggactg 340
           |||||||||||||||||||||||||||||| ||| |||||
Sbjct: 501 ccataataaaaggagacttcttacctcccaaggttgactg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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