BAC Information

Click to search

BAC

Clone NameMSMg01-168B10
Chromosome8 (Build37)
Map Location 53,188,743 - 53,189,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168B10.T7 (MSMg01no168_b10.b1)MSMg01-168B10.TJ (MSMg01no168_b10.g1)
ACCAG365382AG365383
length724721
length of high quality
(start - end)
305 (48 - 352)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no168_b10.b1 PHD_FILE: MSMg01no168_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:04 2005CHROMAT_FILE: MSMg01no168_b10.g1 PHD_FILE: MSMg01no168_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATAAGATTAGCTCCATATATTTTAGGAAGTTTATATTGTACT
AGGTTTTCACATCCTCCTCAAATACCCCTACAGCACACAGTCACTGCTTT
CACAGTATCTCCTCCCTCTCTCTAATCACTTGATCATCCTTTTCTAGACT
TCAACTGCCCTTGGCCATCTGAATACTTTTTTTGCAACCATTACACACTA
AAAAATTTATTAAGTAATACAATTGCCTTCAGTTATTTTTTTGAATTTAG
TAATATATTTTGTTAGTATAAAAATATACTATGATATATTGATGCAATTA
TCATTATATTTTTGACTCCACCCCCCCCTAGGTTAATAAATATTTAAAAA
TTTCAGTGATATGCCGAAATTAACAAAATTGTGCATGCTAGGAAAAGACT
CTAAAGGTAAGTTACATCGCAACTCAACCATAAATTTTTTTTTTAATCAA
GTCAATGATAATACCTTTTATCTAGCTAAAGAACAAAGATGTTACATGTC
ATGGATTTATTCAGCTTAGGTATGGTTGCATAAGTATTCTATTTCCTAAG
ATCGAGAAACCACCGATTTAAATTATCCCTTTCCCAACTTTGCCCCCTTC
ATACCCCTTCCGATTATGTTAGTTCCATTGCCATTTCGCCAATTGCTTTT
TTTTTCCCTTTTTTCACCTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATCAATGCTTTTAAAATTTA
CTCATATAATGTTTAATATTATTTCTCTCCTCTTTTGTTTTTGGCTTTGA
TTCATACATGTCAAGTAAACACAATGTTGCTTACCTGTCATAGCTATCAA
TTAATTCATATATATGCATTGCATGGTGTTTCGACTTGCATAAATAGAGC
ACATTAAAAAAAAAAAGAAAAAAAAAAAGAAAACTATGGAAAAAAAAAAA
AACTCCAGGAGTAAAGGAAATCTTAATATTTAGGCAAAGCCAAGAGAAGT
TCACCTATTTTTATTTATCCCCCACGGCCCCCAAATGTATTTTTACATAT
AAAACTATGTGTAATAAATGATGACTACATAAGGTCATCAATTTATACAT
GTTTCATCCTATTTAGGACATATATCATATAGTTCTCTTTCATATATATA
TATATATATATATATATATAATTAATGTTGAATACACATTAAAAATTACA
ATACATACTGCTTAGATTATTATAGAAATTATAATACCCCTTTAAGATTA
TTATGAGTATAATAAGATTATTATGAATATTATAATAGGATTGTGAATAT
ATTTAAAAGGAGATTTACCTACATATTGTGCGTACTCTACTTTCTTTGTA
AAAATATTCTTTCATTTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_b10.b1 MSMg01no168_b10.b1 CHROMAT_FILE:
MSMg01no168_b10.b1 PHD_FILE: MSMg01no168_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:04 2005
         (305 letters)



>mm_chr8_53188367_53189070
          Length = 704

 Score =  532 bits (275), Expect = e-155
 Identities = 296/303 (97%), Gaps = 2/303 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaataagattagctccatatattttaggaagtttatattgtactaggttttcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggaattcaataagattagctccatatattttaggaagtttatattgtactaggttttcac 619

                                                                       
Query: 64  atcctcctcaaatacccctacagcacacagtcactgctttcacagtatctcctccctctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atcctcctcaaatacccctacagcacacagtcactgctttcacagtatctcctccctctc 559

                                                                       
Query: 124 tctaatcacttgatcatccttttctagacttcaactg-cccttggccatctgaatacttt 182
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 558 tctaatcacttgatcatccttttctagacttcaactgccccttggccatctgaatactat 499

                                                                       
Query: 183 ttttgcaaccattacacactaaaaaatttattaagtaatacaattgccttcagttatttt 242
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 498 ttttgcaaccattacacactaaaaaatttatgaagtaatacaattgccttcagttatttt 439

                                                                       
Query: 243 tttgaatttagtaatatattttgttagtataaaaatatactatgatatattgatgcaatt 302
           |||||||||||||||||||||||  || ||||||||||||||||||| ||||||||||||
Sbjct: 438 tttgaatttagtaatatattttgggag-ataaaaatatactatgatacattgatgcaatt 380

              
Query: 303 atc 305
           |||
Sbjct: 379 atc 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 704
Length adjustment: 9
Effective length of query: 296
Effective length of database: 695
Effective search space:   205720
Effective search space used:   205720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)