BAC Information

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BAC

Clone NameMSMg01-169L15
Chromosome8 (Build37)
Map Location 125,047,666 - 125,203,838
singlet/doubletdoublet
Overlap geneCdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik
Downstream geneC230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169L15.T7 (MSMg01no169_l15.b1)MSMg01-169L15.TJ (MSMg01no169_l15.g1)
ACCAG366508AG366509
length710724
length of high quality
(start - end)
247 (73 - 319)271 (434 - 704)
definitionCHROMAT_FILE: MSMg01no169_l15.b1 PHD_FILE: MSMg01no169_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:30 2005CHROMAT_FILE: MSMg01no169_l15.g1 PHD_FILE: MSMg01no169_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,203,594 - 125,203,838)(125,047,666 - 125,047,936)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACCTTCCCAGAGGTTGTGAGCACCTTTCTTAAGTTCAAGCCA
CACACTGGCCACTTACCACACCCCAGACATGCCACCCAGCAGCACGAGGT
GGGTAAGCCTGCAGCTCAAGCTGAGGGTCCCACTCCTGCCTCAGGCTGAG
CTCCCAGAGACTGGCTTACGAGGTCTGCTGAGAGGCCACTCTGCCGGGGC
CACTCTTCACGACAGTATCTCTGAAGAGGACTGTCCTTTGCTTTCTCGGT
GTACACAGCACACTAGCTTTTCTTTAGCTGGTGTCCATATGCCTGGGATA
AAAAGTTTGCGTGCNTCTCGAANATCGAAAACTCTTCTAGATCCACATTC
NTCTGTGAAATGGGCTCGGAAAAACTCCACTCAAAATAAGATTGAGGCGT
GTGGCCAGGGAGATCTGAAAATGTGGACAGTTTTATAGGTGTCAGACTAG
GATTAGATAGCATCCTCCACAGAGGGAGATCCGGGAAACCAAGGAGCCCA
GATCCCACCCCAGGAGGACCGTGCAGGAACGCTTTTTCAAGAAGGCAGAG
GTGAACCCCTGAGAGGGACCCCAACTGGGGACAACCAAGCCACTACAGCT
AGTCTGTAAAGAAACGGCGGGGATTTTCACTTATTTAACCATCCAACCTT
GGACCATTGC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGCTAGAAGCTGCGCGCT
GGGAGTCCGGAGTCAATGAACCCTAGTGGCCACACCTGCCACCCCCCAGG
AAGGCTGAAAGCAAAAACTTAAGCCAAACCAGGCCCAGAAGGCTCTGGCC
AATCCCCCTTCCTGGAAGAGGAGGGTTGGTACAGTCAGCTGAGGGCACAT
GAGGAAGCCAGCTGCCCGGACTTGTTCCTAAAGCGTGGGACTAAGGCTCC
TAGACTGGGTTAGCCTGGGCAGTGTGGCTGGATATCTTAGCACCTTTGAT
CAGGTCCAGTTTGTATCCAGNACCANACCGCGTCAGTCAAGCCTAAGGTG
CATTTTGTTCCTTTGAAAAAGAAAAAAAAAGACACTTCTACAGCCCCAGG
GAGACACTGAGCCTGGCAGTCATGCGAAGTCATGGTAATTTCAGCGCTAG
CCACCGTCTGTTCAGATACATCCAATCTGGCTGGCCCCTTCTCCGAGTTA
TTCCTGATCTGCTGGAGACAGGAAAGGCAAGGGGGTTGAGGATGCCTAGC
TGACGGACGCCCACCTCTTCAGGCTCCAAAGCCGACGTGAAGCGCAGGGA
CAGTTTCTAAGCACATTGTGGATACAGAGCTCTAAACGGATCTGTTTCCT
TCTGTTAGAGAAGAAAGTGATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_l15.b1 MSMg01no169_l15.b1 CHROMAT_FILE:
MSMg01no169_l15.b1 PHD_FILE: MSMg01no169_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:30 2005
         (247 letters)



>mm_chr8_125203394_125204040
          Length = 647

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgagcacctttcttaagttcaagccacacactggccacttaccacaccccagacatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 445 tgtgagcacctttcttaagttcaagccacacactggccacttaccacaaaacagacatgc 386

                                                                       
Query: 61  cacccagcagcacgaggtgggtaagcctgcagctcaagctgagggtcccactcctgcctc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 cacccagcagcacgaggtgggtaaacctgcagctcaagctgagggtcccactcctgcctc 326

                                                                       
Query: 121 aggctgagctcccagagactggcttacgaggtctgctgagaggccactctgccggggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggctgagctcccagagactggcttacgaggtctgctgagaggccactctgccggggcca 266

                                                                       
Query: 181 ctcttcacgacagtatctctgaagaggactgtcctttgctttctcggtgtacacagcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcttcacgacagtatctctgaagaggactgtcctttgctttctcggtgtacacagcaca 206

                
Query: 241 ctagc 245
           |||||
Sbjct: 205 ctagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no169_l15.g1 MSMg01no169_l15.g1 CHROMAT_FILE:
MSMg01no169_l15.g1 PHD_FILE: MSMg01no169_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:30 2005
         (271 letters)



>mm_chr8_125047466_125048136
          Length = 671

 Score =  501 bits (259), Expect = e-146
 Identities = 268/271 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttctacagccccagggagacactgagcctggcagtcatgcgaagtcatggtaatttca 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 acttctacagccccagggagacactgagcctggcagccatgcgaagtcatggtaatttca 260

                                                                       
Query: 61  gcgctagccaccgtctgttcagatacatccaatctggctggccccttctccgagttattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgctagccaccgtctgttcagatacatccaatctggctggccccttctccgagttattc 320

                                                                       
Query: 121 ctgatctgctggagacaggaaaggcaagggggttgaggatgcctagctgacggacgccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatctgctggagacaggaaaggcaagggggttgaggatgcctagctgacggacgccca 380

                                                                       
Query: 181 cctcttcaggctccaaagccgacgtgaagcgcagggacagtttctaagcacattgtggat 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cctcttcaggctccaaagccgacgtgaagcgcagggacagtttcaaagcacattgtggat 440

                                          
Query: 241 acagagctctaaacggatctgtttccttctg 271
           |||||||||||| ||||||||||||||||||
Sbjct: 441 acagagctctaatcggatctgtttccttctg 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)