BAC Information

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BAC

Clone NameMSMg01-170B18
Chromosome8 (Build37)
Map Location 66,983,256 - 66,983,542
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384831, EG244495, Tll1, LOC100040989
Downstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170B18.T7 (MSMg01no170_b18.b1)MSMg01-170B18.TJ (MSMg01no170_b18.g1)
ACCAG366783AG366784
length729716
length of high quality
(start - end)
214 (435 - 648)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no170_b18.b1 PHD_FILE: MSMg01no170_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:58 2005CHROMAT_FILE: MSMg01no170_b18.g1 PHD_FILE: MSMg01no170_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGAGGAATACTGAATGGCTGAGGAGCACCTAAAAAAAAAA
TGTTCAACATCCTTAATCATCAGGCAAATGCAAATCAAAACATCCCTGAG
ATTCCACCTCACACCAATCAGAATGGCTAAGATCAAAAACACAGGTAACA
GCAGATGCTGACAAGGATGTGGAGAAAGAGGAGCACTGCTCCATTGCTAG
TGGGATAGCAAGCCTGTACAACCACTCTGATAAATCAGTTTGGTGGTTCC
TCAGAAAATTGGACATAGTACTATCTGAGGACTCAGCAATACCACTCCTG
GGCATATACCCTGATAAGCTCCNAGACATANCCGAATTAGGACGCATGCT
CCACTATGTTCATAGCAGCCTTATAAATAATAGCCAGAAGCTGGAAAGAA
CCCAGATCTTCCTCAATAGTGGAATGGATACAGAAAATGTGGTACATTTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCA
TAGGGAAATGGAAGGAACTGGAGTATATCATCCTGAGTAAGGTAACCCAA
TAACAAAAGAATACACATTATATGCACTCACTGATAAGTCGATATTAGCC
CAGAAGCTCAAGAAGAAAGAAGACCATAGTGTGGATACTTCTATTCATCT
TAGAAGGTGGGAACAAAACACCCATGTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAGAACTTTTCCCCCTTTAAGA
GGCTCCCCTTTTGTTTTGCAGTTTTAGCTTCACAGAGAATTAAGTCCAAC
AAACCTCTACAGTGTACTGCAATTGGTATTGTGTAGGTGCAGTCATGGGA
GAAGACACGTACACAATGCAAATATTTCCAAGTGTGGTAAGTTCTACAAT
CGAAGAAGAAAAGAGTTATGGTGCAAAGATTAAGACAATGGACTTCAAAG
CCAGAATGCATGGTGCTCACGTGTGATGTTACTTAGTTACTGAGCAAGTT
AGCCAAGTTACTTATTTTCTCACCCCCCCATCGCTCATGACTCTGTATGT
ACATATGTGTGCGCACTTATGCCCATGTTTTTATGGAGGGCAGAAGTCTA
CTTGGGCTGTAATTGTCAGGTCTTTCATCTTGTAATTTTGAGGAAAGGTC
TCTCATTGGGACTTGAAGTTCACCAGTTCCATCAGGCTGCCTGGTCAGCA
AGCTCTAGCTATAGTGTCAGTGGCCTCCCCAACACTCGGGACGAAAGCGT
ACACCATCATGCTGGACTTTTAATGTGATTGTGAGGGACTGAACTTGGCT
CCTCATGTTTTACCCAAAAATACCTTCTTTACAGACCCTCAATCACCTTG
CTTTCATAACCCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_b18.g1 MSMg01no170_b18.g1 CHROMAT_FILE:
MSMg01no170_b18.g1 PHD_FILE: MSMg01no170_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:59 2005
         (287 letters)



>mm_chr8_66983056_66983742
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagaacttttccccctttaagaggctccccttttgttttgcagttttagcttcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aatagaacttttccccctttaagaggctccccttttgttttgcagttttagcttcacaga 428

                                                                       
Query: 61  gaattaagtccaacaaacctctacagtgtactgcaattggtattgtgtaggtgcagtcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaattaagtccaacaaacctctacagtgtactgcaattggtattgtgtaggtgcagtcat 368

                                                                       
Query: 121 gggagaagacacgtacacaatgcaaatatttccaagtgtggtaagttctacaatcgaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gggagaagacacgtacacaatgcaaatatttccaagtgtggtaagttctacaatcgaaga 308

                                                                       
Query: 181 agaaaagagttatggtgcaaagattaagacaatggacttcaaagccagaatgcatggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agaaaagagttatggtgcaaagattaagacaatggacttcaaagccagaatgcatggtgc 248

                                                          
Query: 241 tcacgtgtgatgttacttagttactgagcaagttagccaagttactt 287
           |||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 247 tcacatgtgatgttacttagttactgagtaagttagccaagttactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)