BAC Information

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BAC

Clone NameMSMg01-171A23
Chromosome8 (Build37)
Map Location 130,555,257 - 130,555,569
singlet/doubletsinglet
Overlap genenone
Upstream geneGabarapl2-ps8_1688.1, Pard3, EG628847
Downstream geneNrp1, LOC668494, Itgb1, LOC100042659, LOC100042667, Ccdc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171A23.T7 (MSMg01no171_a23.b1)MSMg01-171A23.TJ (MSMg01no171_a23.g1)
ACCAG367424AG367425
length721851
length of high quality
(start - end)
316 (46 - 361)74 (133 - 206)
definitionCHROMAT_FILE: MSMg01no171_a23.b1 PHD_FILE: MSMg01no171_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:11 2005CHROMAT_FILE: MSMg01no171_a23.g1 PHD_FILE: MSMg01no171_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTTTCAGACTGATGAAAGGGGTCAATTAGACTCCTTTCCTTCC
ATATGTCCCCACAATTGCCTTGCCTCTCAGTACCACCTCAATTATGGGTT
GACTTCTTTCATGACTGAAAGTTTGGGAAAGGCCTGGACTTGAAGAGCAC
ATTCAGGAACCAGAGTAAGCGGCAGTCCTTCTTTCTGGCCCTTGTGACCT
CATCTCCAGACAGACTGTGGGAAAGGAACATCTAAGACGTGCAAAGCACT
ACATTCAACTTCAGAACCGCTGTCCTTGCTGGAGGGAGACACCAGTGTGC
GTGGGTACAGAATAATACTTCACGCCACCCCCCTATTAGACATCCTCTAC
TGAGCTAATAGACGGAAATACGGAGAAAGAAGGAACATTCTGAAAAGACA
GCTTTCATCACATCACGGAGATTCCTTTAGCGGTACTTCAAAGGGAAGAA
GTTTGCAGTCCAGATTGCGGTAACAGCGCTTCGCCCCCAGGATGGTTAGC
TGGAAACACGTTCCTACCCGCCACAAAGTGACTAAATCTAAAAACAGGTT
CTCCAGTGACGCTCCTCCCCTGAACAGATTCAACTGAAACCCTGGGTCTG
TGCATTACATTCACTATAAGAATTTGGATTAGGAGAGTGGATTGCGTAAG
CATGGAACTTTTGGAGGCGTG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGAGAAAGAAGAGGATGACA
TTTCCAAATCAAATCAATTACTGTTGGACGTCAGGTTGAATGTGGAGTGT
CTCCCACAGGCTCGAGTGTTTGAGCACATGGCCCCAGCTGGTGGGGCTAC
TTGGAAGGCGATGAGCCTCTAGGAGGCAGAGCCTCCACTGGTGGTATTGC
GTTTCTGTCCTGTTATCTCCCCCTCTCTTTTCCATTCTTCCTCTTTCCTC
CCTCACACCTTCCCCCATTCCCGCCCTCTTTTTTTTTTCCCTCTTTTCTC
TTTGCCGCCCCGCCACCCCTTTTTTTTTTTTCCCCCCCCCCCCCCGGAAA
AATTTAAGGAGTTCTTCTTTTGGGGCGCCCCCCCCTTTTTTAAAAATAAA
AATCTCCCCCGTGTGTGTGTCCCCTTCCCTTCCCTTCCCCTTTTCCCCCC
TTTATTTCCCCCTCTCTCCTCCTTACACCCTTATCTCTCTATCCTTTCGT
CCCACTTTTCTCCCACTTTTTCCCGCACTCTTTCCTACCCCCCCCCTCTT
TCTCCCTCTTATTATGCCCCCATCTTCCCCCCCCCTTCTCCTCCCTTTTT
TACTCCTCCTCTTATCTCTCCCCCCACTCACACACCTCCTCCATTCTCTC
TTCCTCCCAATCCTCCCACCCCTCTACCTCCTCCCCTGCCCTTCCCTCTG
CCCACCCCCCCCCTGTCTCTCCGCCCTATTCCCCCTCCCTATAATCTACT
CCCCCCCCTTTTCAACTCTCTTCATCTTTTCTTTCTTCCTCCCTCCTCCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_a23.b1 MSMg01no171_a23.b1 CHROMAT_FILE:
MSMg01no171_a23.b1 PHD_FILE: MSMg01no171_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:11 2005
         (316 letters)



>mm_chr8_130555054_130555769
          Length = 716

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgtttcagactgatgaaaggggtcaattagactcctttccttccatatgtcc 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattcttgttttagactgatgaaaggggtcaattagactcctttccttccatatgtcc 457

                                                                       
Query: 64  ccacaattgccttgcctctcagtaccacctcaattatgggttgacttctttcatgactga 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccacaattgccttgcctttcagtaccacctcaattatgggttgacttctttcatgactga 397

                                                                       
Query: 124 aagtttgggaaaggcctggacttgaagagcacattcaggaaccagagtaagcggcagtcc 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagtttgggaaaggcctggacctgaagagcacattcaggaaccagagtaagcggcagtcc 337

                                                                       
Query: 184 ttctttctggcccttgtgacctcatctccagacagactgtgggaaaggaacatctaagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttctttctggcccttgtgacctcatctccagacagactgtgggaaaggaacatctaagac 277

                                                                       
Query: 244 gtgcaaagcactacattcaacttcagaaccgctgtccttgctggagggagacaccagtgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtgcaaagcactacattcaacttcagaaccgctgtccttgctggagggagacaccagtgt 217

                        
Query: 304 gcgtgggtacaga 316
           |||||||||||||
Sbjct: 216 gcgtgggtacaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)