BAC Information

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BAC

Clone NameMSMg01-171P06
Chromosome8 (Build37)
Map Location 100,003,388 - 100,003,699
singlet/doubletsinglet
Overlap geneLOC546090
Upstream geneLOC333331
Downstream geneLOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171P06.T7 (MSMg01no171_p06.b1)MSMg01-171P06.TJ (MSMg01no171_p06.g1)
ACCAG368019AG368020
length722722
length of high quality
(start - end)
318 (46 - 363)286 (80 - 365)
definitionCHROMAT_FILE: MSMg01no171_p06.b1 PHD_FILE: MSMg01no171_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:18 2005CHROMAT_FILE: MSMg01no171_p06.g1 PHD_FILE: MSMg01no171_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAGCTTGTAGTAGGTTCGTCTCTGTTACTTCACAAATATTTT
AACATTTGAATAAATATCAGTACTTCTTTTCTTTCCTTTTCATTGCTGCA
AAGTAATGATTAGTCAGAGAGCAACATGGGAAATAGATGTTTTTATTTAT
TTATCTAGAAAGAAAACAAAAGGGCTCCAACACTAAGAGAAATATATGAA
AACATTTGGGAAAATTTTATAGTGAGACAAGGAATAATGACTTTAAAGTT
TATAAGAAAATCTCTTGTTTTGAATATTTTGAAATATTCACTATTGGTCA
AAATATACTTATAANTTACCTCCNATGCAANACGGAAATATGAGATAGCT
AATAATAGTAATTCCATCTCCCCATCTTAAAAGACTGATCAAAGTCCATT
GGACATTCTTTGGTAATCCATCCTCTGAGCCTGAGAGAGATGCAAGGAAT
CTACCCAAACTGGGAGGCTAACCTAACTGCAGGTCTCCACTCTCCCTTCT
CTCCATAAAGGACATACTTAAGCACAATAAGAAGGTTTACAGAAAGCCAA
GAACCAACATCTACTTATAAATTGAGTGAAATACAACGCAATTCCAATAA
AATCAGGAATAAGACAAGGTTATCCATTCTCTCCATATCATTCTCTACAG
AACTTGAAGGCTTTGTAAAAAC
ACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTCAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACAACATTAATCATCAGGGAAAT
GCAAATCAAAACAACCATGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGACTGCAAGCTTGTACAACCACTCTG
GAAATCAGCCTGGCGGTTCCTCATAAAATTGGACATAGTACTCCTGGAGG
ATCCTGCAATATTTTCTCTTGCCCCCCTACCCCCAAGATGTNCCAACCGG
TAAGTAGGACACATGCTCCACTGCATTCATAGAAAACTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTACATTTACACAATGGAGCACTATTTAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGGCAAATGGATGTACCTGGAGGGCATCATTCTGA
GTGAGGTAACCCAATCCCCAAGGAACTCCACCAATAATGTAATCCCTGTA
TCCCGCATATTATCCCCCGACACCTTAGGACTCCTCACGATTTATTATAC
TGTTGCCCTATTCCATGAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_p06.b1 MSMg01no171_p06.b1 CHROMAT_FILE:
MSMg01no171_p06.b1 PHD_FILE: MSMg01no171_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:18 2005
         (318 letters)



>mm_chr8_100003184_100003899
          Length = 716

 Score =  565 bits (292), Expect = e-165
 Identities = 308/314 (98%), Gaps = 2/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaagcttgtagtaggttcgtctctgttacttcacaaatattttaacatttga 64
           ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaagcttgtagtaggtttgtct--gttacttcacaaatattttaacatttga 262

                                                                       
Query: 65  ataaatatcagtacttcttttctttccttttcattgctgcaaagtaatgattagtcagag 124
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 263 ataaatatcagtacttcttttctttccttttcattgctgcgcagtaatgattagtcagag 322

                                                                       
Query: 125 agcaacatgggaaatagatgtttttatttatttatctagaaagaaaacaaaagggctcca 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcaacatgggaaatacatgtttttatttatttatctagaaagaaaacaaaagggctcca 382

                                                                       
Query: 185 acactaagagaaatatatgaaaacatttgggaaaattttatagtgagacaaggaataatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acactaagagaaatatatgaaaacatttgggaaaattttatagtgagacaaggaataatg 442

                                                                       
Query: 245 actttaaagtttataagaaaatctcttgttttgaatattttgaaatattcactattggtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actttaaagtttataagaaaatctcttgttttgaatattttgaaatattcactattggtc 502

                         
Query: 305 aaaatatacttata 318
           ||||||||||||||
Sbjct: 503 aaaatatacttata 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 716
Length adjustment: 9
Effective length of query: 309
Effective length of database: 707
Effective search space:   218463
Effective search space used:   218463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)