BAC Information

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BAC

Clone NameMSMg01-172G19
Chromosome8 (Build37)
Map Location 101,683,547 - 101,683,830
singlet/doubletsinglet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G19.T7 (MSMg01no172_g19.b1)MSMg01-172G19.TJ (MSMg01no172_g19.g1)
ACCAG368341AG368342
length739736
length of high quality
(start - end)
---288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no172_g19.b1 PHD_FILE: MSMg01no172_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:53 2005CHROMAT_FILE: MSMg01no172_g19.g1 PHD_FILE: MSMg01no172_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAAAATTTGCGGCCGCCAAANGAACCCCATTTCGTACCAGCCNNGGA
NNNNNNNCNTTCCCAAGAAAGAGGGGNNGANNGAGGGAGNNANNNNAGNN
NNNAGGNNNGGNATTTTNACCCAAACGGAGGGGGNNNNNNNNGAGGAANA
ANNNAAGGANAAAAAAAAAAAGGGGGGAAGAGAAGGAANANAGGGANAAG
GGNAAANNNGGAAANAAGAAGAAGAGNAAGAGAAAGNGGGAAAAAGGTTT
TTTTAGTTAANTNGATGTAGNTGTGGAGATAGAAATATGTAAGTGAGGTA
AAAAAAGAAAGGTTTGNATGGATTAAAAGGAGAAGAAGAAGGGGANAAGA
ANATTTAGGTGGATCCCNAAGCAGGAACCCCGAGANANGGNANANANGNN
GNNNGNGNNNNNGNNAAAAAAGNNAAAANNAAAANGGGNNNNGGNNNNGG
GGNNNNGNNNNNNNGNNNNNGNNNNGNNNANGNNGGGNGNGAGGNGAANG
GGGGGGGNNGNGGGNNGGGGGGGGGGGGGAGNAGAGGGAGGAAAAGGGAA
AAAAGAGGAAGAAAGGAGAGAGGAGGAAGAGGAAGAGGAGAGAAGAAAAG
GGGGAGGGAGAGAAAGGGGAAAGGGGGGAGGGGAGAAGAAAAGGGGGGGG
AGTTTTTTTTTTTTTTTTTTAGAAAAAGAGGAGGGGAAGGGATTTGATTT
GGTAGTAAAGTGTGATAGTGTGTTATTGATAAATGTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTACCTATCAAGTGCTTTCTTCATGGTATTGT
ATGGTCAAGGCAGGTAGCACAGCATGAAGACTTCTAAAGGAAGACTGCCA
TAAGAGCATCCAAAGAGTTCCCTTTTATACTATGATGAAAATGAGCAACT
TGTTCATCTTGACCTTTGTTTGTTTGTTTGTTTAGTTGTGTATATGGCAG
CATTAAGTGCAAGCACAGTTATTTCCACAAAGACTTTCTGATATATTTAT
GAGTGAGCAGTACTAATCCTCAGTGACAAAAATTGAAATGTTTCCCAAAG
ACAAAGTTTTTCNGACCCCGAACCTNCACGACAGAAATGGAAATCACTAC
ATCATAAAATTCTGTTCCTGGAACAAAGATATCTAAACGATTTCATTAAT
TCCTCATGGCTACATTGTTAAATTTATGGAAAGTAAATAAATTTGAGGGC
ATGATATCTGTGGGACTGAGATTTATCCTTATTATGCAAATGTAAAATTC
TAAACGGTTAAGAAATTTTAAAGTTCAGAAAAGTCTAGTCACAAGTTGTT
TGCTAGATATCTGCAGAGAAGCTAGGGTAAACCAGCACAAATGAACACAA
GGCCTCTCCCTGGTTATAACAGGTCAGAACAGGTTATTAATATTTGCATA
TCTTTAAAAATCAATTCTGGGAAAATCATGGAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g19.g1 MSMg01no172_g19.g1 CHROMAT_FILE:
MSMg01no172_g19.g1 PHD_FILE: MSMg01no172_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:53 2005
         (288 letters)



>mm_chr8_101683344_101684031
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctatcaagtgctttcttcatggtattgtatggtcaaggcaggtagcacagcatgaagact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctatcaagtgctttcttcatggtattgtatggtcaaggcaggtagcacagcatgaagact 428

                                                                       
Query: 64  tctaaaggaagactgccataagagcatccaaagagttcccttttatactatgatgaaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctaaaggaagactgccataagagcatccaaagagttcccttttatactatgatgaaaat 368

                                                                       
Query: 124 gagcaacttgttcatcttgacctttgtttgtttgtttgtttagttgtgtatatggcagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gagcaacttgttcatcttgacctttgtttgtttgtttgtttagttgtgtatatggcagca 308

                                                                       
Query: 184 ttaagtgcaagcacagttatttccacaaagactttctgatatatttatgagtgagcagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttaagtgcaagcacagttatttccacaaagactttctgatatatttatgagtgagcagta 248

                                                       
Query: 244 ctaatcctcagtgacaaaaattgaaatgtttcccaaagacaaag 287
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctaatcctcagtgacaaaaattgaaatgtttcccaaagacaaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)