Query= MSMg01no172_i21.b1 MSMg01no172_i21.b1 CHROMAT_FILE:
MSMg01no172_i21.b1 PHD_FILE: MSMg01no172_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:03 2005
(310 letters)
>mm_chr8_51580083_51580792
Length = 710
Score = 505 bits (261), Expect = e-147
Identities = 294/307 (95%), Gaps = 6/307 (1%)
Strand = Plus / Minus
Query: 5 gaattcttgtctctatcttgttatatttgtattgtagtaaactacactgatgttttgaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattcttgtctctatcttgttatatttgtattgtagtaaactacactgatgttttgaca 599
Query: 65 tagatgcactataca-atcttatcttgaaagagcaactgtctttggaccagactttcttg 123
||||||||||||| | |||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 598 tagatgcactata-atatctaatcttgaaagagcaactgtctttggaccagaatttcttg 540
Query: 124 tttgtgtttgttttgtttgtttgtttgtttgttggtagtgctgagaaggaaaagttctag 183
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 539 tttgtgtttgttttgtttgtttgtttgtt----ggtagtgctgagaaggaaaagttctag 484
Query: 184 atgcgctaccatgtcatcaccgtacttccactgacctagctctgcattccttcgcctgct 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgcactaccatgtcatcaccgtacttccactgacctagctctgcattccttcgcctgct 424
Query: 244 tttaactctttaacatgcaaacgttggtatttattttgctgctattgaaaatgtctctgt 303
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 423 tttaactctttagcatgcaaacgttggtatttataaagctgctattgaaaatgtctctgt 364
Query: 304 ggctcat 310
|||||||
Sbjct: 363 ggctcat 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_i21.g1 MSMg01no172_i21.g1 CHROMAT_FILE:
MSMg01no172_i21.g1 PHD_FILE: MSMg01no172_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:03 2005
(274 letters)
>mm_chr8_51556695_51557368
Length = 674
Score = 491 bits (254), Expect = e-143
Identities = 269/274 (98%)
Strand = Plus / Plus
Query: 1 tcttctgaggaagaagatggaaagtattagcatggagtaagtgaagaagaatacatttct 60
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 201 tcttatgaggaagaagatggaaagtattagcatggagtaagtgttggagaatacatttct 260
Query: 61 tgtggaaggacatgactgttgcgttcttgaactcttgagaacttttatggcaagcactag 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggaaggacatgactgttgcattcttgaactcttgagaacttttatggcaagcactag 320
Query: 121 accagcaaaagactgagctggttatagtctaccaggattgtgagtgtccagcacactggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagcaaaagactgagctggttatagtctaccaggattgtgagtgtccagcacactggg 380
Query: 181 ctttgaccaactacaagaatatctaagtggttatcagttgtgtgggaagggttccttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgaccaactacaagaatatctaagtggttatcagttgtgtgggaagggttccttcag 440
Query: 241 tgatacaactgctttaaactggttgagttgcctt 274
||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatacaactgctttaaactggttgagttgcctt 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
