BAC Information

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BAC

Clone NameMSMg01-172M21
Chromosome8 (Build37)
Map Location 108,564,768 - 108,565,072
singlet/doubletsinglet
Overlap geneDus2l
Upstream geneEs31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28
Downstream geneNfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M21.T7 (MSMg01no172_m21.b1)MSMg01-172M21.TJ (MSMg01no172_m21.g1)
ACCAG368601AG368602
length722726
length of high quality
(start - end)		311 (47 - 357)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no172_m21.b1 PHD_FILE: MSMg01no172_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:21 2005CHROMAT_FILE: MSMg01no172_m21.g1 PHD_FILE: MSMg01no172_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAGATTCATCTCTCTCTGGGGTCAAAGGCATGTGCCACCACTG
CCCAGCAACTGGCAGCTTCCTTTCTGAGTAAAAGGAATAGTCCCTGGGTG
GCAGCCCAAGAACCAGAATGGGAAAGGAAGGTCTTTAGGAGCCTAGGCTC
TGTCCTCATGAATCCTCCTATTTTGAAAAGTCATATATACAAATATATAA
ACTGGAAGCTGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTCAGGAG
GCAGAGGCAGGAGGATTTCTTATTTCGAGGCCAACCTGGTCTACAAAGTG
AGTTCTTTTGATGNCTTTGCCTGACANGACCCCCCCTGTTTCGAATAATT
ATAAAATAAACAAACAACCCAATAAATATATAAACTGGACCAGGAGGATA
TGACACTTTTAACATGTTTTTAAATGCTTCTTATATAACAATTAGGAAAG
GTTGCAAAGAAAGATCAAGACGTTAACACGGGAAAATAGTCCAGGAGGCA
TCATGATTTGGCAACGTGAGAATCACAGACCCCGAGAGAGACCACCCGGC
CTGAATGCCCATGGCATTGCTATCCTCTTCCTACATCAAAAACCTCACGT
CACGCACGAGTGGGAGTAATGCGACCCCCTACCCTGGACCTCTACCCCTG
CAACTGGTGCTTCTTACTATAT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTACACAGAGAAACC
CTGCCTCAAAAACTTTTCACAACCAAAAGGTTGTTTTCTGACCTCTATAT
GCATGATATACACAAAGCACACATTATACACATATACAAATAATGATGAT
GATGATGATGTTTTTGAGATAATAGTCCTGGCTGGCTTAGAACTTGCTAC
ATTACCTGCTTCTTCTGCCTTCAAAGTACTGGGAATAAAGGTCTGTGCCA
CCATATGTGTCACATATATTTATATTTATATATGAATGATAGGTTTTGTT
TCTCTGTGTAGTTCNTTCTCCNTCGAACTCCAGAGCCTGAACCATGCTGG
CCTCGAAGTCAGAGATCTACCACAAAAAAATCCCTGGGATTACGGGCGTG
CACCACTACCACCTGGCTAAGAAATTTTAAAACGCCATTGCCAAAATGCT
GCTGAGATATAACTCAGTGTTGAGCACCTGCCTTGAATATGTGAAGCCTT
TTGATCTAATCTCTTGTAATAATAACAAAAAAAATCATATCTAAAGAGAA
GGAGAGCTGGAGATATACCTCACTCAGTGGATGGAGTGCTTGCCTGGCAT
TCAGGAATCCCTGGGTTCCGTCTCTAGCACCACCAAGGACTGAACATATA
GATGCTTGTCTGCGACCTCTCACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m21.b1 MSMg01no172_m21.b1 CHROMAT_FILE:
MSMg01no172_m21.b1 PHD_FILE: MSMg01no172_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:21 2005
         (311 letters)



>mm_chr8_108564607_108565317
          Length = 711

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaagattcatctctctctggggtcaaaggcatgtgccaccactgcccagcaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gaattctaagattcatctctctctggggtcaaaggcatgtgccaccactgcccagcaact 407

                                                                       
Query: 65  ggcagcttcctttctgagtaaaaggaatagtccctgggtggcagcccaagaaccagaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ggcagcttcctttctgagtaaaaggaatagtccctgggtggcagcccaagaaccagaatg 347

                                                                       
Query: 125 ggaaaggaaggtctttaggagcctaggctctgtcctcatgaatcctcctattttgaaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggaaaggaaggtctttaggagcctaggctctgtcctcatgaatcctcctattttgaaaag 287

                                                                       
Query: 185 tcatatatacaaatatataaactggaagctgggcgtggtggcgcatgcctttaatcccag 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 286 tcatatatacaaatatataaactggaagccgggcgtggtggcgcatgcctttaatcccag 227

                                                                       
Query: 245 cactcaggaggcagaggcaggaggatttcttatttcgaggccaacctggtctacaaagtg 304
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 226 cactcaggaggcagaggcaggaggatttctgagttcgaggccaacctggtctacaaagtg 167

                
Query: 305 agttc 309
           |||||
Sbjct: 166 agttc 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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