BAC Information

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BAC

Clone NameMSMg01-173B07
Chromosome8 (Build37)
Map Location 115,301,638 - 115,302,276
singlet/doubletsinglet
Overlap geneCntnap4
Upstream geneCfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B07.T7 (MSMg01no173_b07.b1)MSMg01-173B07.TJ (MSMg01no173_b07.g1)
ACCAG368797AG368798
length779719
length of high quality
(start - end)
190 (38 - 227)647 (73 - 719)
definitionCHROMAT_FILE: MSMg01no173_b07.b1 PHD_FILE: MSMg01no173_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:41 2005CHROMAT_FILE: MSMg01no173_b07.g1 PHD_FILE: MSMg01no173_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGC
CATGGCCAGGTTTGATACATTGCACACACACACACACACACACACACACA
CACACACACACACACACACACACACACTCATTCACACAGAGGCACAGGGG
ATGCAGGAGGGAAAGGGAGAGGAGTTGGCAGGAGTAGAGGAGGAAAGATA
GAACTAAAACCTTCTAAAACAGCTNCCTAATCCCAGCATTGCATGCTTGG
NCCTCTTCCTAAGGNNTTGNAANCCCTGNNAGAATAACCCAGNTTTAATT
ACCCTACCCAGGTTTTTTGAAATTTTCAGGCTTTTTCCTGTGGGCAGCCC
CTCCTATTGGCAAAAACAAGGGCCTCCAATGCCTTTTTTTTTTTGGAACA
TAATTTGGGGGCTTAAACCAATAAGGGGGCCCTCTCCCCACACTGGTGTT
TTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCGCCCCCACCTTTAAAATG
GGATTTTACTATATTCCAATGTCGATTCTCTCACCGCCCTCCTTACAAAA
ATTTGCGTTGNNNNTCCAGAGGCTCTCCTTTTTCTAAAAAAAAGAAAAAC
CTTTTTATTTGGGGGCTCCTTTTCGCTTGTGGGCCGCTCAACGCGGCCGC
TTTTTTTTCCCTCACCCCAACTTGGGCCCGCGGTGGNTCCCNCNNNNNNN
NNNNNNNNTTTAAGGGTNNCGCCTGCCAGTTATNNNNNCCCCCNNNNNNN
NNNNNNNCCNTCTTCCCTCTTAGTTTTTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGGCAACTAGAATGAGACCCTGTATC
AACAACCCTCTGCCAGAACCATTTGTAAATACAAAGTCATGTTTGCAGTA
AGACTTTCTAGATAGTGAGACTACAGGTGACATCTCATCTTTTGTTCTGT
GTACAGTGGACATCTATTTTTTAATCAAGGGGAAAAATCAATAACACTAT
TTTCTGTTAACATTGGAAAAGGTATATAAGCAAAACATCAAGATGCATCT
TCAGATCTGATAAAGGAGGCAGCAAAAAGTCCATCACAAATACATGCTGG
CAGCCTCTGTAGTTTATATTATTATTTTTTAAAATTGAAAATGGATGAGA
GCATTGGAAGCTGTGGTCTCAATATATTATTCATTCTAAACTCTGAAAAA
CACCAATGCTCTAATCAGCTGTCTGAGTCTAAACTAGAAGTTCACAAATG
ACATTTGTACATGGTACTTTACCTGTGTCAAGATAATTTCTTCTATAGTG
CCTCTAAAGCAAAGATGTCACTGACATTTCCATTCAAAAAATAATGCTAG
GGCTGGAGAGATGGCTCGGTCTGTAAAGTGTTTGGCTCACAAGCATGAGG
ACTTGAGCTCAGAGCCATGCATGGCACATTTGTAAAAGGCCAAGCACAGC
AGCATGCCTCTGTAACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b07.g1 MSMg01no173_b07.g1 CHROMAT_FILE:
MSMg01no173_b07.g1 PHD_FILE: MSMg01no173_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:41 2005
         (647 letters)



>mm_chr8_115301430_115302476
          Length = 1047

 Score = 1212 bits (627), Expect = 0.0
 Identities = 636/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   ctagaatgagaccctgtatcaacaaccctctgccagaaccatttgtaaatacaaagtcat 68
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 209 ctagaatgagaccctgtatcaacaaccctctgccagaaagatttgtaaatacaaagtcat 268

                                                                       
Query: 69  gtttgcagtaagactttctagatagtgagactacaggtgacatctcatcttttgttctgt 128
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 269 gtttgcagtaagactttctagatagtgagactacaggtgacctctcatcttttgttctgt 328

                                                                       
Query: 129 gtacagtggacatctattttttaatcaaggggaaaaatcaataacactattttctgttaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtacagtggacatctattttttaatcaaggggaaaaatcaataacactattttctgttaa 388

                                                                       
Query: 189 cattggaaaaggtatataagcaaaacatcaagatgcatcttcagatctgataaaggaggc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cattggaaaaggtatataagcaaaacatcaagatgcatcttcagatctgataaaggaggc 448

                                                                       
Query: 249 agcaaaaagtccatcacaaatacatgctggcagcctctgtagtttatattattatttttt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agcaaaaagtccatcacaaatacatgctggcagcctctgtagtttatattattatttttt 508

                                                                       
Query: 309 aaaattgaaaatggatgagagcattggaagctgtggtctcaatatattattcattctaaa 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaaattgaaaatggatgagagcattggaagctgtggtctcaatatattattcattctaaa 568

                                                                       
Query: 369 ctctgaaaaacaccaatgctctaatcagctgtctgagtctaaactagaagttcacaaatg 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctctgaaaaacaccaatgctctaatcagctgtctgagtctaaactagaagttcacaaatg 628

                                                                       
Query: 429 acatttgtacatggtactttacctgtgtcaagataatttcttctatagtgcctctaaagc 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 acatttgtacatggtactttacctgtgtcaagataatttcttctatagtgcctctaaagc 688

                                                                       
Query: 489 aaagatgtcactgacatttccattcaaaaaataatgctagggctggagagatggctcggt 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaagatgtcactgacatttccattcaaaaaataatgctagggctggagagatggctcggt 748

                                                                       
Query: 549 ctgtaaagtgtttggctcacaagcatgaggacttgagctcagagccatgcatggcacatt 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctgtaaagtgtttggctcacaagcatgaggacttgagctcagagccatgcatggcacatt 808

                                                  
Query: 609 tgtaaaaggccaagcacagcagcatgcctctgtaacctc 647
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tgtaaaaggccaagcacagcagcatgcctctgtaacctc 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)