BAC Information

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BAC

Clone NameMSMg01-173C11
Chromosome8 (Build37)
Map Location 46,924,932 - 47,094,194
singlet/doubletdoublet
Overlap genePdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
Downstream geneLrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173C11.T7 (MSMg01no173_c11.b1)MSMg01-173C11.TJ (MSMg01no173_c11.g1)
ACCAG368846AG368847
length725716
length of high quality
(start - end)
324 (366 - 689)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no173_c11.b1 PHD_FILE: MSMg01no173_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:46 2005CHROMAT_FILE: MSMg01no173_c11.g1 PHD_FILE: MSMg01no173_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,924,932 - 46,925,255)(47,093,907 - 47,094,194)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCCCATT
TTCATTTTAATACAGAACCGTAGCAATTCATTTCCACACATAAGTTTTGT
CTTCTAAGGACATAAAGACCTGGGACTGGAGAAAAATGGCTCAGGGGTTA
AAGAGCACTGGCTGCTCTTCCAGAGGACCTAAGTTCACTTCCCAGCACCC
AAACTGGTAACTCCCAACTATCTGTAACTCCAGTTCCAGGGGAATCCCAC
CCCAATTCTGACCTCCACGGGCATGGCATACACTTGGCTCACAGACAAGC
AGGGAAAACATTCATACACTTAAAATTAAAATAAATCAATATTTTTTTAA
TTCGCAAAGACCTAATTCAAAAATTTGTAATGATTCAGTATATTCAATGA
TATCAAGAAATACAATGGCATGTTTTTAACAAGCATTCTGATAGATTATG
AGACTTATCTGTTTTATTAAAAGCACAGGGGGAAGTCAGCAGGTAAAAAG
TTGATTTAAAATAACTGGGTTTGCATACGGAACCTCACACTGACATCAGC
ACCCTGCACGCTGCTTCTTTTTGTGTGTGTGTAAGAACTTGTTTTCTATA
CATGGTAGCCGCATTGAACTCCTATCCTGGCTTATTGTTTGAGTAGGAAT
AATGTCATGGAGTCATGGGCTTTCATCCGACATGCCTCAGCTTTGGGACG
GCTGGAGGAAGCATGGCTTGATTAA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCGAAATCACTCCGCTTCTACGAAATGCCAGGTTTT
GGGTTTTTTTTCTAGGTGCTCTCTAAGTACTGATTCCTATAATACTTGAG
GAAATAGAGATCGTTATGAGCACTGTTGAATACAGGCGGAGCCTGTCAGA
GCAGAGAGCTGATGTACCTGATCTCAAAGGGCTGGTTAGCAAGGGCACCC
TATCCACCTATGTGTCATTTTGTTTTATCTCTTAAAACAACAAGCCAAGC
AAATGTCATTTTTAATGTGTTAGAAATGTGTGTCTTCTACTTTAAGAAGA
TGGTCATTCTGATTTTTTCTGGCTCTGCCCCCTGTAGAAGTCCGTGCTAC
ATCCTCTCACGTTTGTCCCCTGGAACAGGACTGACAACCCGTGCTGCCAA
CACATGTCTCTTGGAGGAGAAACAAAGGTACTATGAAAGTGAGCCTGCTG
CTTGCTTGGGGATTTTCTCTGAACTCCTGGCCCCCTGTCCCGTACTGTTC
ATTGCAGCTGCCTTCCTTACTTTTTGACTTTAATCCATCTCTCTGAATTG
TCTCATAATAGCTATCAATGTTCTCCCACCCCAAGGCCTGATCTTGGTCC
CTATAGTCACGAGGCTGTCTCTAGGAGAGCTGTTTTCTGAGGGGTCATTT
CTGCTCTGATTTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_c11.b1 MSMg01no173_c11.b1 CHROMAT_FILE:
MSMg01no173_c11.b1 PHD_FILE: MSMg01no173_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:46 2005
         (324 letters)



>mm_chr8_46924732_46925455
          Length = 724

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaaaaatttgtaatgattcagtatattcaatgatatcaagaaatacaatggcatgttt 60
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 201 ttcaaaaatttgtaatgattcagtatatccaatgatatcaagaaattcaatggcatgttt 260

                                                                       
Query: 61  ttaacaagcattctgatagattatgagacttatctgttttattaaaagcacagggggaag 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacaagcattctgatagattataagacttatctgttttattaaaagcacagggggaag 320

                                                                       
Query: 121 tcagcaggtaaaaagttgatttaaaataactgggtttgcatacggaacctcacactgaca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tcagcaggtaaaaagttgatttaaaataactgggtttgcatatggaacctcacactgaca 380

                                                                       
Query: 181 tcagcaccctgcacgctgcttctttttgtgtgtgtgtaagaacttgttttctatacatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcaccctgcacgctgcttctttttgtgtgtgtgtaagaacttgttttctatacatgg 440

                                                                       
Query: 241 tagccgcattgaactcctatcctggcttattgtttgagtaggaataatgtcatggagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagccgcattgaactcctatcctggcttattgtttgagtaggaataatgtcatggagtca 500

                                   
Query: 301 tgggctttcatccgacatgcctca 324
           ||||||||||||||||||||||||
Sbjct: 501 tgggctttcatccgacatgcctca 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no173_c11.g1 MSMg01no173_c11.g1 CHROMAT_FILE:
MSMg01no173_c11.g1 PHD_FILE: MSMg01no173_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:46 2005
         (288 letters)



>mm_chr8_47093707_47094394
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactccgcttctacgaaatgccaggttttgggttttttttctaggtgctctctaagtact 60
           ||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct: 488 cactcagcttctacgaaatgtcaggttttgggttttttttctaggtgctatataagtact 429

                                                                       
Query: 61  gattcctataatacttgaggaaatagagatcgttatgagcactgttgaatacaggcggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gattcctataatacttgaggaaatagagatcgttatgagcactgttgaatacaggcggag 369

                                                                       
Query: 121 cctgtcagagcagagagctgatgtacctgatctcaaagggctggttagcaagggcaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctgtcagagcagagagctgatgtacctgatctcaaagggctggttagcaagggcaccct 309

                                                                       
Query: 181 atccacctatgtgtcattttgttttatctcttaaaacaacaagccaagcaaatgtcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atccacctatgtgtcattttgttttatctcttaaaacaacaagccaagcaaatgtcattt 249

                                                           
Query: 241 ttaatgtgttagaaatgtgtgtcttctactttaagaagatggtcattc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttaatgtgttagaaatgtgtgtcttctactttaagaagatggtcattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)