BAC Information

Click to search

BAC

Clone NameMSMg01-174A03
Chromosome8 (Build37)
Map Location 120,318,883 - 120,465,883
singlet/doubletdoublet
Overlap geneMphosph6
Upstream gene2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174A03.T7 (MSMg01no174_a03.b1)MSMg01-174A03.TJ (MSMg01no174_a03.g1)
ACCAG369440AG369441
length693736
length of high quality
(start - end)
319 (46 - 364)567 (132 - 698)
definitionCHROMAT_FILE: MSMg01no174_a03.b1 PHD_FILE: MSMg01no174_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:47 2005CHROMAT_FILE: MSMg01no174_a03.g1 PHD_FILE: MSMg01no174_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,465,572 - 120,465,883)(120,318,883 - 120,319,449)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGCCTGCCGCAGAGCAGCTGGACCTGGCACTCTAGGAAGGAGAC
CCAGACAATGTCCATTTCAGCATCTTCAGTGAGATCTGCAGAAGGAGAAT
AGAGTCGGGTGCTGCGGGCAGCAGCATATAGAAGAACCCAGTCAAAAGAA
AGAGACTGCAAGCCCTTCCCCACCGGGGCCACACACAGCAAACAGAACAT
GAACAAGCAAAATCCTCTATACACAGACTCAGAGAGGTGAGTGCCGTATA
AACGATGAAGGCTCATGAGCCTTGTGGCCCAAAGCCTTTAAGCCCAGTTC
ACCAGCCTGTTTCCATGTCATCTCTTCCCTGATAAACTGTCTCTATTTCT
GACCAAGAATCCCTTGGCTAATTCTTTGTCCTGGGGCACAAGACCCTGGA
AACTTCAGCCACTGGCCCGGACTTAGATTCACACCTACATCAATCTTACA
ACAACCACAGTTCCTGAATCACAGAGCAGCGGTATCAGCACCATTCAGGT
GTTCGTGCAGAGCCATTCCTGAGGCCACCACTCCGTCTCCCCGTGTCTGT
ACCTCTGCTGCCTGTATGCTTATTCAAGACAGAGTCTAGTTTAGAGTTTT
ACAGAGTACACACACATTAGCCAAGCTACTCTTACATGACCCC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATAAACTTGAACTTTTCATG
GCTGAAGCAAAAAAACTTGACTCTTGAGCCACCCCCCCCCAGTGCTCATT
AAATATTCAGGAGAGGAGAATGGCCATTAGAACGCAGGACGGGGACAGAC
AGCAGGCCTGGGCGGCTCTCACACAAGGCCCGGCTGGCTATAAACACCAG
GCTGAAGCCTTGTCTCCGTGGCTCCTGTGTCAGTGGAGGAGCTTGTGACG
CTGGGGGTTGGGCCAGCAGACAAACTGCAGCCGCAAGGGACAGCACAGAA
AGCATGGGCACAAATGCTCTCGTTAACAGGCCACAGCACGTCTGACTGCA
AGAGCGATTCTTTAGTCTTTGGTTTGGGACCCAAATCCCAGGTCAGCATG
TTCTCCAGCAAGCCAGCGACGGCCAGCGACGGCCAGCGAAGGCCAGGCCT
CAGACTCCTTTATGGAGTCCTGCTCTGCTTCTGACCAAAAACACTACGCA
CAGGTGAGTCCAGGGCCTGGGGAGCAGGAAGGAAGGAAAGAATGGACATC
CTGGTCCAGACACAGTGCCAGAAAAGAAACCATTTACATCACACAGGGCA
ACAACACAAACCTTCCGTTCCAGGCACTCAATCAGCACCCATCGTAGCCA
ACAGGACAAAACCGAACACAAGTGTATCCACGGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_a03.b1 MSMg01no174_a03.b1 CHROMAT_FILE:
MSMg01no174_a03.b1 PHD_FILE: MSMg01no174_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:47 2005
         (319 letters)



>mm_chr8_120465368_120466086
          Length = 719

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagcctgccgcagagcagctggacctggcactctaggaaggagacccagacaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcaagcctgccgcagagcagctggacctggcactctaggaaggagacccagacaat 457

                                                                       
Query: 65  gtccatttcagcatcttcagtgagatctgcagaaggagaatagagtcgggtgctgcgggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtccatttcagcatcttcagtgagatctgcagaaggagaatagagtcgggtgctgcgggc 397

                                                                       
Query: 125 agcagcatatagaagaacccagtcaaaagaaagagactgcaagcccttccccaccggggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agcagcatatagaagaacccagtcaaaagaaagagactgcaagcccttccccaccggggc 337

                                                                       
Query: 185 cacacacagcaaacagaacatgaacaagcaaaatcctctatacacagactcagagaggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cacacacagcaaacagaacatgaacaagcaaaatcctctatacacagactcagagaggtg 277

                                                                       
Query: 245 agtgccgtataaacgatgaaggctcatgagccttgtggcccaaagcctttaagcccagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agtgccgtataaacgatgaaggctcatgagccttgtggcccaaagcctttaagcccagtt 217

                       
Query: 305 caccagcctgtt 316
           ||||||||||||
Sbjct: 216 caccagcctgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no174_a03.g1 MSMg01no174_a03.g1 CHROMAT_FILE:
MSMg01no174_a03.g1 PHD_FILE: MSMg01no174_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:47 2005
         (567 letters)



>mm_chr8_120318683_120319649
          Length = 967

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccccccccagtgctcattaaatattcaggagaggagaatggccattagaacgcaggacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccccccccagtgctcattaaatattcaggagaggagaatggccattagaacgcaggacg 260

                                                                       
Query: 61  gggacagacagcaggcctgggcggctctcacacaaggcccggctggctataaacaccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggacagacagcaggcctgggcggctctcacacaaggcccggctggctataaacaccagg 320

                                                                       
Query: 121 ctgaagccttgtctccgtggctcctgtgtcagtggaggagcttgtgacgctgggggttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaagccttgtctccgtggctcctgtgtcagtggaggagcttgtgacgctgggggttgg 380

                                                                       
Query: 181 gccagcagacaaactgcagccgcaagggacagcacagaaagcatgggcacaaatgctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagcagacaaactgcagccgcaagggacagcacagaaagcatgggcacaaatgctctc 440

                                                                       
Query: 241 gttaacaggccacagcacgtctgactgcaagagcgattctttagtctttggtttgggacc 300
           |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaacaggccacagtacgtctgactgcaagagcgattctttagtctttggtttgggacc 500

                                                                       
Query: 301 caaatcccaggtcagcatgttctccagcaagccagcgacggccagcgacggccagcgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatcccaggtcagcatgttctccagcaagccagcgacggccagcgacggccagcgaag 560

                                                                       
Query: 361 gccaggcctcagactcctttatggagtcctgctctgcttctgaccaaaaacactacgcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccaggcctcagactcctttatggagtcctgctctgcttctgaccaaaaacactacgcac 620

                                                                       
Query: 421 aggtgagtccagggcctggggagcaggaaggaaggaaagaatggacatcctggtccagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtgagtccagggcctggggagcaggaaggaaggaaagaatggacatcctggtccagac 680

                                                                       
Query: 481 acagtgccagaaaagaaaccatttacatcacacagggcaacaacacaaaccttccgttcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagtgccagaaaagaaaccatttacatcacacagggcaacaacacaaaccttccgttcc 740

                                      
Query: 541 aggcactcaatcagcacccatcgtagc 567
           |||||||||||||||||||||||||||
Sbjct: 741 aggcactcaatcagcacccatcgtagc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)