BAC Information

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BAC

Clone NameMSMg01-175C08
Chromosome8 (Build37)
Map Location 87,918,221 - 87,918,510
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik
Downstream gene4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175C08.T7 (MSMg01no175_c08.b1)MSMg01-175C08.TJ (MSMg01no175_c08.g1)
ACCAG370225AG370226
length736795
length of high quality
(start - end)
290 (69 - 358)119 (122 - 240)
definitionCHROMAT_FILE: MSMg01no175_c08.b1 PHD_FILE: MSMg01no175_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:10 2005CHROMAT_FILE: MSMg01no175_c08.g1 PHD_FILE: MSMg01no175_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGAGATTCCCGGATACACAGAGCAGCCCTGTTCCAAAATAACAACAA
AACAAAACAAAACATAGAAACGATCTGGAGCTGAGTATACAACTTGGCGG
TAATTGGCAGGGTAACCAGAGGCCACTGGGGCATGTGAAGTAGGTACCTT
TAGGGATGTTAGCCAGGTGCAGTTTTGATGGGGCACACAGACAGCTGTAC
CCACAGTTTGTACAAATGGCGCCCAAAGGCAGGTCTTGGATGTGGAGTTG
TTGGTGAAAGGACTTGAGCTGAGCCTATGTAACTTGTCCTGCTCTTGGGT
AACTCCAGTTTTTCCTTTCCTACCTCAGTTTGAATTTTAGAGAGATCTCA
TGGCTACCGTTTCCCCCCNCAAGCATTTTAAGGAAGGAATCCTTGAGATC
AAAGGAGTCAGATCCACTGGCTCTGGAGAGAAGAACTGGGACTCTCCATG
TATCCAAGGCAAGGATGGGGGACAGAAGTGCTGAGTCCTCACCTCCAGGC
AGATGGAGGCCTTTGGAAGGTGATCCTTGCCATTATCTACCTATCTGAGG
CCAAAATTTTCCTTTGCCCGGTTCCTAAGGCTTTTTCTTTAACATGATTG
TCTGTATTATTCCTTGTTTTTCTCTGGTGCGTGTCCAATTGGATGCCCTA
GGCATTTTTTTTTTTTTTTTGCCTACCGATTTAACG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAATCTGCCTCCACCTCTGAAAGCTAAGATAT
TTTGCAAACTCAGCTCGNAATTAATCTTTATCACTAGTAGGGTTCTGGGG
GTATTCTAAAAAGTCCTAATCAGGTTCTGAAATTGGTTGTTGTTGGTTTT
TTTTTTTGTTTTTTTTTTTTTAAGATTTATTTATTTATTTGCTTGTTCAT
TATAGATGATTTTATATATATCACATTATGTCTTTATAACTCATTCCATA
AAATTGTGATTTTTTTTTGTGGTTACAGATTTTTGAACACCGGAAATTTT
TGAATGGATTCCCAGAGCATTCCCCCAGGAGTATTCTATTTATTATTAAA
GTGACCCCCCCCCCTTAAAAAAAAAAAAAAATATCTGGGGGGGGGCGTGT
TTTTTTTATATTGGGTCTTCGGGAATACTTTTTTTTCCTTTTTTTTTTCT
GTTTTCATTTTTCTCATTTCTTTGTTTCTTCTTCTTACTCCTTTCCTTTC
TTTTTTCTCCTTCTTCCCAATATTAATGACTCATCCCTCTTTTTCTTATT
TTTTTTTTTTTTTTATCACTGTTTCTTTTTTATATTATTCTTTCTTTAGT
CTTTTTTTTTCTTTGTGATTTATGCTCTTATTATTCTTTTTTTCTTCCTA
ACTATCTTTATGTTTTTTCTCATTTTTTCTTCTTCGTTTCCTCTCTCTCT
CTCCCATCCACCTTTTTTAGACTCATTTTCGTTTTATTATTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_c08.b1 MSMg01no175_c08.b1 CHROMAT_FILE:
MSMg01no175_c08.b1 PHD_FILE: MSMg01no175_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:10 2005
         (290 letters)



>mm_chr8_87918021_87918710
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagagcagccctgttccaaaataacaacaaaacaaaacaaaacatagaaacgatctgg 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 201 cacagagcagccctgttccaaaataacaacaaaacaaaacaaaacaaagaaaagatctgg 260

                                                                       
Query: 61  agctgagtatacaacttggcggtaattggcagggtaaccagaggccactggggcatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgagtatacaacttggcggtaattggcagggtaaccagaggccactggggcatgtga 320

                                                                       
Query: 121 agtaggtacctttagggatgttagccaggtgcagttttgatggggcacacagacagctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaggtacctttagggatgttagccaggtgcagttttgatggggcacacagacagctgt 380

                                                                       
Query: 181 acccacagtttgtacaaatggcgcccaaaggcaggtcttggatgtggagttgttggtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccacagtttgtacaaatggcgcccaaaggcaggtcttggatgtggagttgttggtgaa 440

                                                             
Query: 241 aggacttgagctgagcctatgtaacttgtcctgctcttgggtaactccag 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacttgagctgagcctatgtaacttgtcctgctcttgggtaactccag 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)