BAC Information

Click to search

BAC

Clone NameMSMg01-177H18
Chromosome8 (Build37)
Map Location 30,379,610 - 30,379,784
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666446, LOC100042598, Unc5d
Downstream geneLOC100041237, EG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177H18.T7 (MSMg01no177_h18.b1)MSMg01-177H18.TJ (MSMg01no177_h18.g1)
ACCAG371861AG371862
length803936
length of high quality
(start - end)
175 (28 - 202)---
definitionCHROMAT_FILE: MSMg01no177_h18.b1 PHD_FILE: MSMg01no177_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:04 2005CHROMAT_FILE: MSMg01no177_h18.g1 PHD_FILE: MSMg01no177_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGATCCGCGGAATTCCAGAATACCGCAGCTCTTGAAGGTCAAAGAAAA
GCATGACATCCTCTTGATTCTCACTGAACTTCCCCAGTGTAATCTATGGG
TGTTTTGAGTAGATTGTTTCATTGAGATGGTCAAGTTTGCATGGGATATA
AAAGGGGTTTGAGACTTTTTCTGGAAGAGACACTTCCTTTGACTGTGATA
GTAATACCAAAGGTCAAGATTGTCCAAGCATAACCAGAACAACTTATAGA
GTATGCATGATCTGATTTGAAGGTAACTGTCTTTATACGTGACTGCCGCT
ATAGGATTCAAGTGTTGAAAATTTTTTTATATTATCCCCCCCCCCCCCCC
CCGTTTTTAAAACGTTCCCTACGTCCCTCTTTTTCCCCCCTCCCCTCTAT
AAAAAAAAAAACCAATATTTCTTTTGGAAGATTATCATATCTCAAATATT
CAGCAAAATCCAAACCGGCCTAAATATACACATTGGTTACTTCGTGACAC
CGCGTGTTCCCACACTCCGCGTATTAACCACATTCTTTAATTCGGTTTAC
AATATGCGGTAACATGGCCTGTTATACTAGCGGTGTACCATCACTATAAA
AAATCCGCCACTAAAAAGCAAAATATAATAAGGGCAAATACTATGGTGCT
TTATTTTCGCGGACTTTATACCACGCCCCTCTTTATCTCTTATCCCTATT
TTTACTCCCACCACCTCTCTTTTTTCTTCTCCACCCCATATGCCACTCGA
AACCACAGTTACCACTCATCAATAACGTATAAACCAAATGCTCTCTGTAA
AAC
GGGCGGGCCGCTCTGGGTCGCTCGACATATATAGGTGACACTAAATAGAA
GGATCTCGCGGGAATTCTCGCGCGTTAAACGACCATCTCGTGTTTCTCAA
GGTATGGAGGGTATTGATGAGTGTCGCCGTGTGTCGTGTGTAGTCACATT
ACNTACAACTATTATTACACACAAAGACTTACATGGGGGAAAGAAACCTA
GACATGTCGGAAGAAAAAGCCAATTGTGGACGATGTGCCATATGCCTGTA
TGTTTGGTGCCAAAGTGCTTGCTGATCATTAGAGTTTGGACACTCCAAGA
CACCTTTGGCCCCCTTACTACGTTTACCAAGAAGGTAATGTATATCTTAC
ATTCCCCACTGATCTTTTTGTTGTTCACAAACACAACGCAGCACACACAC
GGGAGAACAAAGTGTTTTTGGTAATTCCCCCCCACCCCCGCCCCCCGACA
TGAAAAATCGGGGTAGAAGCGGGGGGGGGAATTGCGTGGCCTACCCCCGG
GAAAACAAAAAAAAANANTTTTGTTTGTGTGGGGGGGGTTATTGGCTTTT
AATATAGGGGCCAGGGCCCGTGAAAAATTGGGTAATGTAGTTACCATAGG
TAGAGGTATATTGTTGCGACTGAATCCAGAAATTGCCGTAGGGTACGAGC
CTTCAAAAACTGGCGACGTTTAATATGCGCTGGGCGGGCCAGATAAAAAA
TGGCATAGGTAAAATGCGGAGACGTGCGCGGATAAATGGGGAACAAAAGT
GTGGGAGGGACAAGGGGGCGACAAAAAAAAGGGCGGAAACACCGGGGGGG
ACGTTTGGGGCACAAAAAAGGGGAACAACAACGGGGGGGGCAAAGTGGGG
GGTGCAAAACGTTGGTGACCAAAAGGATTATAATATTGGTGTGCGCAACA
ATCGATGAAAAAGGCGGGACAAAATGGGTGTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_h18.b1 MSMg01no177_h18.b1 CHROMAT_FILE:
MSMg01no177_h18.b1 PHD_FILE: MSMg01no177_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:04 2005
         (175 letters)



>mm_chr8_30379410_30379984
          Length = 575

 Score =  308 bits (159), Expect = 2e-88
 Identities = 171/175 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctcttgaaggtcaaagaaaagcatgacatcctcttgattctcactgaacttccccag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||
Sbjct: 201 cagctcttgaaggtcaaagaaaagcatgacatcctcttgattctcagtgaacttccaaag 260

                                                                       
Query: 61  tgtaatctatgggtgttttgagtagattgtttcattgagatggtcaagtttgcatgggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaatctatgggtgttttgagtagattgtttcattgagatggtcaagtttgcatgggat 320

                                                                  
Query: 121 ataaaaggggtttgagactttttctggaagagacacttcctttgactgtgatagt 175
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ataaaaggggtttgagactttttctggaagagacacttcctttgcctgtgatagt 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)