BAC Information

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BAC

Clone NameMSMg01-177J02
Chromosome8 (Build37)
Map Location 131,381,150 - 131,381,820
singlet/doubletsinglet
Overlap geneLOC100042659
Upstream geneNrp1, LOC668494, Itgb1
Downstream geneLOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177J02.T7 (MSMg01no177_j02.b1)MSMg01-177J02.TJ (MSMg01no177_j02.g1)
ACCAG371921AG371922
length726724
length of high quality
(start - end)
682 (45 - 726)535 (74 - 608)
definitionCHROMAT_FILE: MSMg01no177_j02.b1 PHD_FILE: MSMg01no177_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:09 2005CHROMAT_FILE: MSMg01no177_j02.g1 PHD_FILE: MSMg01no177_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACACTGTATACTGACCTTCTTGTGTACTTAATATCCATGCAGAAA
AACATACTAATATATATTAAATACAAATAAATATTTTTTAAAAAAGTATT
ATTTTGTCATCTGGGGTAATGCAGTACAAACACCCATGATAACTTGCTCC
TTCATAAGTGCACAGATATCCTTCAAACTGTTGTGATGGAAAGGCATGTC
TAAAATATACGTTGGTGATGATAACTATATTTAGAGTTTGATAAAAGGAA
AGGAGATTTAGACAGAAATTGAGCAAATAGGGAGGACTTGACTCTACCAC
TAAGGGAGCTCTCTATATCATCACTGTGACTAATGTTCTGCTTACATGAT
CATGCATGTGGCACAGTGATGAATGGAAAATAGTTCATGTGAATAATACC
ACTGTGGAAGGGCCCATGAGAAACTTGCTCAAGCAAGCATGATCCAATTT
AATTTCAATTCAATTACTGGCTCTATTTGGTCTACTATTGGGGAGACACA
TTATTCCATGATGGGGAACATATGGAGTTGGAGTGAGTAGTCAGATTGCA
CTTGGCTGTCAGAAAGCAGAGAAAAATTAAGAAGAGGGAATAGACTAAAA
ATCATTAAAGCCTGCTCACCATGAGTCACCCCATTCAGCAAAGCTTCACT
TTTTTCCAAACAGCACTACCAGCCAG
CGAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTATAGCTCTGTATTCCATTTTTT
AATAGGGTTATTTGGTTTTCTGGAATATAACTTCTTGAGTTCCTTGTATA
TATTGCATATTAGCCCTCTATTGAGCTTTGGGTTTGGTAAAGATCTTTTT
CCAATCTGTTGGTTGCCTTTTTGTCTTATTGACAGTGCCCTTTCCCGTAT
ACAAGCTTTGCAAATTCTATGAGGTCCCATTGGTCAATTCTTGATCTTAA
GGTACAAGCCATAGGTGTTCTGTTCAGGAAGTTTTCCTCTGTGCCCATAT
CTTCGAGGCTCTTCCCTACTTTCTCGCCTGTTTAAGTGCCTCTGGTTTTA
TGTGGTCCTTGATCCACTTAGACTTGAACTTTGTACAAGGAGATAAGAAT
GGATCAATTTACATTTTTCTACATGCTAACTACCAGTTGAGCCAACAATA
TTTGTTGAAAATGCTGTACTTTTTCCAGTGGATGGTTTTAGCTCCTTTGT
CAAAGATCAAGTGACCATAGGTGTGTGGATTCATTTCTGGGTCTTCAATT
CTATTTTATTGATATAACTGTCTGTTACCCTACCATTACCATGAAGTTTT
TAGCTACCATTGCCGCGCACCACCCGCCTGGCCCTAGACAAGCCGTTTCC
TCTACAGCCTCATTTATTGAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_j02.b1 MSMg01no177_j02.b1 CHROMAT_FILE:
MSMg01no177_j02.b1 PHD_FILE: MSMg01no177_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:09 2005
         (682 letters)



>mm_chr8_131380946_131382027
          Length = 1082

 Score = 1241 bits (642), Expect = 0.0
 Identities = 666/678 (98%), Gaps = 7/678 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacactgtatactgaccttcttgtgtacttaatatccatgcagaaaaacatact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacactgtatactgaccttcttgtgtacttaatatccatgcagaaaaacatact 264

                                                                       
Query: 65  aatatatattaaatacaaataaatattttttaaaaaagtattattttgtcatctggggta 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatatatattaaataaaaataaatattttttaaaaaagtattattttgtcatctggggta 324

                                                                       
Query: 125 atgcagtacaaacacccatgataacttgctccttcataagtgcacagatatccttcaaac 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 atgcagtacaaacacccatgataacttgctccttcagaagtgcacagatatccttcaaac 384

                                                                       
Query: 185 tgttgtgatggaaaggcatgtctaaaatatacgttggtgatgataactatatttagagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttgtgatggaaaggcatgtctaaaatatacgttggtgatgataactatatttagagtt 444

                                                                       
Query: 245 tgataaaaggaaaggagatttagacagaaattgagcaaatagggaggacttgactctacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgataaaaggaaaggagatttagacagaaattgagcaaatagggaggacttgactctacc 504

                                                                       
Query: 305 actaagggagctctctatatcatcactgtgactaatgttctgcttacatgatcatgcatg 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actaagggagctctctagatcatcactgtgactaatgttctgcttacatgatcatgcatg 564

                                                                       
Query: 365 tggcacagtgatgaatggaaaatagttcatgtgaataataccactgtggaagggcccatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| |       ||
Sbjct: 565 tggcacagtgatgaatggaaaatagttcatgtgaataataccactgtggta-------tg 617

                                                                       
Query: 425 agaaacttgctcaagcaagcatgatccaatttaatttcaattcaattactggctctattt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agaaacttgctcaagcaagcatgatccaatttaatttcaattcaattactggctctattt 677

                                                                       
Query: 485 ggtctactattggggagacacattattccatgatggggaacatatggagttggagtgagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggtctactattggggagacacattattccatgatggggaacatatggagttggagtgagt 737

                                                                       
Query: 545 agtcagattgcacttggctgtcagaaagcagagaaaaattaagaagagggaatagactaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agtcagattgcacttggctgtcagaaagcagagaaaaattaagaagagggaatagactaa 797

                                                                       
Query: 605 aaatcattaaagcctgctcaccatgagtcaccccattcagcaaagcttcacttttttcca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 798 aaatcattaaagcctgctcaccatgagtcaccccattcagcaaagcttcacgtttttcca 857

                             
Query: 665 aacagcactaccagccag 682
           ||||||||||||||||||
Sbjct: 858 aacagcactaccagccag 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)