Query= MSMg01no178_p13.b1 MSMg01no178_p13.b1 CHROMAT_FILE:
MSMg01no178_p13.b1 PHD_FILE: MSMg01no178_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:52 2005
(673 letters)
>mm_chr8_55116247_55117315
Length = 1069
Score = 1243 bits (643), Expect = 0.0
Identities = 661/669 (98%), Gaps = 4/669 (0%)
Strand = Plus / Plus
Query: 5 gaattcactcgtatactatatggtattcttggttttcttagtacaatgttccttcaactt 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcgtaaattatatggtattcttggttttcttagtacaatgttccttcaactt 264
Query: 65 ctttcctagcaaccagaaaaacacctttgctgttacaaatattctgtagagtgtcattca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttcctagcaaccagaaaaacacctttgctgttacaaatattctgtagagtgtcattca 324
Query: 125 atatctaaaatatggtatttccacagccataaatgtgtacttatacaaagtttatttaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatctaaaatatggtatttccacagccataaatgtgtacttatacaaagtttatttaga 384
Query: 185 aaaatttcccactaaaaatagtcagcccatttacgatgccgcaaagtatattttacaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaatttcccactaaaaatagtcagcccatttacgatgccgcaaagtatattttacaaga 444
Query: 245 agtttttttttttttactgtctttagatatataggtcctttacactggttatatttatat 304
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttttttttt----actgtctttagatatataggtcctttacactggttatatttatat 500
Query: 305 tgattcatagctatggttaaaagacataattattccattataattaatacctttgtgtct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgattcatagctatggttaaaagacataattattccattataattaatacctttgtgtct 560
Query: 365 atagaggacaatttcttaggtaccctcaacaaattaatcttggaatgtcctcaagaattc 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagaggataatttcttaggtaccctcaacaaattaatcttggaatgtcctcaagaattc 620
Query: 425 atataatataataaaataaatataatatttgcctaaaatgtatgcccatcatttctagat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atataatataataaaataaatataatatttgcctaaaatgtatgcccatcatttctagat 680
Query: 485 catttattatacagaatgtaaatgttacacaaacagctgatatactgtaccttttaggag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catttattatacagaatgtaaatgttacacaaacagctgatatactgtaccttttaggag 740
Query: 545 gcaatgataaggaaagtctgtttatgtttaatgcagatataatttgaaaaactattttgc 604
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 gcaatgataaggaaagtctgtttatgttcaatgcagatataatttgaaaaactattttgc 800
Query: 605 atctctactttctatggaatctacagataaaatgtgttatctgtaatgataattcatata 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atctctactttctatggaatctacagataaaatgtgttatctgtaatgataattcatata 860
Query: 665 aaagtattc 673
|||||||||
Sbjct: 861 aaagtattc 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1069
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1059
Effective search space: 702117
Effective search space used: 702117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_p13.g1 MSMg01no178_p13.g1 CHROMAT_FILE:
MSMg01no178_p13.g1 PHD_FILE: MSMg01no178_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:52 2005
(648 letters)
>mm_chr8_55195196_55196243
Length = 1048
Score = 1065 bits (551), Expect = 0.0
Identities = 626/653 (95%), Gaps = 5/653 (0%)
Strand = Plus / Minus
Query: 1 catggatagatgagacttgaatatgcagagaagagaagagaagagaagagaagagaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 catggatagatgagacttgaatatgcagagaagagaagagaagagaagagaagagaagag 700
Query: 61 aa--ga---gaagagaagagaagagaagagaagagaagagaagagaagagaagagaagag 115
|| || |||| |||| |||| |||| |||| |||| |||| |||| |||| |||| |
Sbjct: 699 aagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaaggg 640
Query: 116 aagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagccaat 175
||| |||| |||| |||| |||| |||| |||| |||| |||| ||||||||||||||||
Sbjct: 639 aagggaagggaagggaagggaagggaagggaagggaagggaagggaagagaagagccaat 580
Query: 176 tagtttttactgcaatcatgaaagcagggcgtaacatcaaaccagtctaggaacaccaac 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tagtttttactgcaatcatgaaagcagggcgtaacatcaaaccagtctaggaacaccaac 520
Query: 236 cactgaaattcatggaatacatggattttagacatattttagaggaaaagaagagctgac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 519 cactgaaattcatggaatacatggattttagacatattttagaggaaaagaagagctaac 460
Query: 296 ttactgataaattacgttttaggcaataacattaaatgaaaaaacaatcaaaggtttcca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttactgataaattacgttttaggcaataacattaaatgaaaaaacaatcaaaggtttcca 400
Query: 356 taggttcatgttaattagacacacatattcaatgcctggcacataggaagtacccagcaa 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 taggttcatgttaattatacacacatattcaatgcctggcacataggaagtacccagcaa 340
Query: 416 gtagtagccatgcaaagacagaaggagaatgaaaatataaagaagtaaactgagaaaaca 475
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gcagtagccatgcaaagacagaaggagaatgaaaatataaagaagtaaactgagaaaaca 280
Query: 476 aggtgaacgtatgttaataggtagcagagtaaactaatggataaaacaagtattacttag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aggtgaacgtatgttaataggtagcagagtaaactaatggataaaacaagtattacttag 220
Query: 536 catggtttatctctcttgggactatccatgatcaagactcactgttgcctttgggtctta 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 catggtttatctctcttgggactatccatgatcaagactcactgttgcctttgggtctta 160
Query: 596 ttcttttccagccttcctctttattcccagaaataatgactatgagacataat 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttcttttccagccttcctctttattcccagaaataatgactatgagacataat 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
