BAC Information

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BAC

Clone NameMSMg01-178P23
Chromosome8 (Build37)
Map Location 91,385,212 - 91,513,248
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985
Downstream geneSall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178P23.T7 (MSMg01no178_p23.b1)MSMg01-178P23.TJ (MSMg01no178_p23.g1)
ACCAG372917AG372918
length737748
length of high quality
(start - end)		559 (46 - 604)518 (77 - 594)
definitionCHROMAT_FILE: MSMg01no178_p23.b1 PHD_FILE: MSMg01no178_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:54 2005CHROMAT_FILE: MSMg01no178_p23.g1 PHD_FILE: MSMg01no178_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,385,212 - 91,385,767)(91,512,829 - 91,513,248)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCTAATCCCTGCTTGATTTTTGAAGCATAATTCAATTCAGCAA
TTCAATTCAACAAACATTTATTGCATACTTATCAGAGTGAGGCTAAACTC
AGCATTTGGAGAATTTGCTTTTATGTTTATAAAAAGTCTATTTCTTGCTG
ATGTCCTGGATGAGCTAGCTGTGTAGGTGGGAAGGGAGGCAGGGCAAATG
GAGCCCATTTCACAGATGAAGATTCTTACTGCCCCCCGTGCAATGTCAAG
TCCCCCACCCACCCAAGCAGTGGTTCTTTGATTAGCACCTGTTCTTCCCA
TTTAGTGCTTTTTTTCCCCATCGAGGAAGGTAGGGATGTTTGGTACCAGA
AGTAGCACTTGGCACAAAACATGTCCTCAACAAATGTTTGTTAAATGAAT
ATATGTGCCAAAGGAGGAAGAGAGGGAGAGACAAGGGAAGAATGAAGAGG
CCGTTGAAAGATCCATTTCTAGTGCTCCGTAGGACCTTGGCTCCGATCTT
TTCTTTCCTGGCATCAATTTCCTCTTCTTGTAGTGGAGTAGGGGTAGTTC
TTGAAAGTTTAGGTGATTTCCATTTTGTCTTACACCCCATTGTGCCCGAT
TATTTGTTTGGCATTGCCCCATCTTGGCACCTCCCCTGTTACATTGTCCA
AGTTTTTTCTACGTTTGATTTTGTTGTTTGTTTTTTT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGGCCTCTAGACTCAGAACAC
CAAAGTCCATCTGTGTCTGGATCACTTTCTTGTGTTACTTCTTTGCAGAT
TCCTTCAGTCTGAGTTTGCTTCCTGCCCCCTCTCCGGGATGTCTATTATT
ATGATAAACACCATGAAACAAGTTACTTAGCTTCTTCTAAACATCTTATA
GAGTTGCTTGGTTTTACCTATCTGAGAGCTTGCATGCATGTGATACGAGG
TCAAAAGAGGACATCAAATCCCTTGCAACTGCAGTTACAGGTGGTTGAGA
GACTCCGTTTGGATGCTGAGAACCAAACCTGGGACTTCTGCAAGAGTAGC
AAGTTATCTTTAACCACTGAGCCACCTCTTCAGTTCGTGTTTATTTTCTT
ATCTTTCTTTTGTTTCCTCTCTTTTGTTGATGTTGTGGTTGTTGTTTTGA
ATCTGTTTCTTTTTATAGCTCTGTGTCTCCTTTTCATCAAAAGAACACCG
TTTGTTCTGACTCTACCAGAGTTCACTATGTCTCAAGTGTCCCTGGCTCC
ACTATTTTCCATCTCTAGGCCACCCTCTCACTGTCCCAAGTCTGTGTTAC
TCAGGTCTTGAATTAACTAGCCTCTCAGCTTGACTTTCATCTGGTCACAG
TGTGGAATATGTGTCTCTCAATGTGTTCCTTATTTGGTATGTGTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_p23.b1 MSMg01no178_p23.b1 CHROMAT_FILE:
MSMg01no178_p23.b1 PHD_FILE: MSMg01no178_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:54 2005
         (559 letters)



>mm_chr8_91385009_91385967
          Length = 959

 Score = 1060 bits (548), Expect = 0.0
 Identities = 554/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgctaatccctgcttgatttttgaagcataattcaattcagcaattcaattc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgctaatccttgcttgatttttgaagcataattcaattcagcaattcaattc 263

                                                                       
Query: 64  aacaaacatttattgcatacttatcagagtgaggctaaactcagcatttggagaatttgc 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacaaacatttattgaatacttatcagagtgaggctaaactcagcatttggagaatttgc 323

                                                                       
Query: 124 ttttatgtttataaaaagtctatttcttgctgatgtcctggatgagctagctgtgtaggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttatgtttataaaaagtctatttcttgctgatgtcctggatgagctagctgtgtaggt 383

                                                                       
Query: 184 gggaagggaggcagggcaaatggagcccatttcacagatgaagattcttactgccccccg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggaagggaggcagggcaaatggagcccatttcacagatgaagattcttactgccccccg 443

                                                                       
Query: 244 tgcaatgtcaagtcccccacccacccaagcagtggttctttgattagcacctgttcttcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcaatgtcaagtcccccacccacccaagcagtggttctttgattagcacctgttcttcc 503

                                                                       
Query: 304 catttagtgctttttttccccatcgaggaaggtagggatgtttggtaccagaagtagcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catttagtgctttttttccccatcgaggaaggtagggatgtttggtaccagaagtagcac 563

                                                                       
Query: 364 ttggcacaaaacatgtcctcaacaaatgtttgttaaatgaatatatgtgccaaaggagga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttggcacaaaacatgtcctcaacaaatgtttgttaaatgaatatatgtgccaaaggagga 623

                                                                       
Query: 424 agagagggagagacaagggaagaatgaagaggccgttgaaagatccatttctagtgctcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agagagggagagacaagggaagaatgaagaggccgttgaaagatccatttctagtgctcc 683

                                                                       
Query: 484 gtaggaccttggctccgatcttttctttcctggcatcaatttcctcttcttgtagtggag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtaggaccttggctccgatcttttctttcctggcatcaatttcctcttcttgtagtggag 743

                           
Query: 544 taggggtagttcttga 559
           ||||||||||||||||
Sbjct: 744 taggggtagttcttga 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_p23.g1 MSMg01no178_p23.g1 CHROMAT_FILE:
MSMg01no178_p23.g1 PHD_FILE: MSMg01no178_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:54 2005
         (518 letters)



>mm_chr8_91512829_91513746
          Length = 918

 Score =  804 bits (416), Expect = 0.0
 Identities = 419/420 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggggcctctagactcagaacaccaaagtccatctgtgtctggatcactttcttgtgtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 420 agggggcctctagactcagaacaccaaagtccatctgtgtctggatcattttcttgtgtt 361

                                                                       
Query: 61  acttctttgcagattccttcagtctgagtttgcttcctgccccctctccgggatgtctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acttctttgcagattccttcagtctgagtttgcttcctgccccctctccgggatgtctat 301

                                                                       
Query: 121 tattatgataaacaccatgaaacaagttacttagcttcttctaaacatcttatagagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tattatgataaacaccatgaaacaagttacttagcttcttctaaacatcttatagagttg 241

                                                                       
Query: 181 cttggttttacctatctgagagcttgcatgcatgtgatacgaggtcaaaagaggacatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttggttttacctatctgagagcttgcatgcatgtgatacgaggtcaaaagaggacatca 181

                                                                       
Query: 241 aatcccttgcaactgcagttacaggtggttgagagactccgtttggatgctgagaaccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aatcccttgcaactgcagttacaggtggttgagagactccgtttggatgctgagaaccaa 121

                                                                       
Query: 301 acctgggacttctgcaagagtagcaagttatctttaaccactgagccacctcttcagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 acctgggacttctgcaagagtagcaagttatctttaaccactgagccacctcttcagttc 61

                                                                       
Query: 361 gtgtttattttcttatctttcttttgtttcctctcttttgttgatgttgtggttgttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gtgtttattttcttatctttcttttgtttcctctcttttgttgatgttgtggttgttgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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