BAC Information

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BAC

Clone NameMSMg01-179F10
Chromosome8 (Build37)
Map Location 125,805,068 - 125,973,232
singlet/doubletdoublet
Overlap geneFanca, Spire2, Tcf25, Mc1r, Tubb3, Def8
Upstream geneZfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276
Downstream geneAfg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179F10.T7 (MSMg01no179_f10.b1)MSMg01-179F10.TJ (MSMg01no179_f10.g1)
ACCAG373151AG373152
length712713
length of high quality
(start - end)
234 (120 - 353)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no179_f10.b1 PHD_FILE: MSMg01no179_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:19 2005CHROMAT_FILE: MSMg01no179_f10.g1 PHD_FILE: MSMg01no179_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,805,068 - 125,805,298)(125,972,948 - 125,973,232)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACACATAAGACGACACTGAGTTTCTTTGAGTTGTGCTGACCCGTGCTG
TCACTAGCAGATAGCACCGAGGTTTGAGGACTGTGTGGCTGACCTTTGGT
GGAAGTCCATGATCTCGCTGACAAGGACTGTGCACGCCTCTTCCAGGACT
CCACCACAGCCGCCCAAAGCCGTCGGAGCTGGCAAGTAGCGCTCATAGAT
TGCCCATTGATGGAAGTCATGTCTGCAATGGTGGAAGGCCGAGGTCAACA
CTGAGCAACACTTTGTAACCATCCTGAAGTGGTCTCTCTCAGAAGAACAC
TTGTTTGTTACTGCCCCCCGGCAGCTAGCCCCAGCAGCCTGAGAGCTCAC
AGGTGAGCGACCACCCATTGACTGCAAGACAGGGGACAGAGCTGTGGCCA
AGCCGTCTTTCCTATGCACCAGGGAAGGGCCTCAAGGACATGGTGACTGT
TTTAAGTGGAAACAGCCAAACACAAGTGAGGTAGCTCACACCACAAAGAC
CAGGCGAGGTTCACGGAGAGGCACTTTGTCCATGTGGGCTGATATCTCAA
GCATTAGGAGTGTGACTCATGCTAGTGAGGATGGCTGTGAACGCAGCCCT
CTGTGTTTAACTTCCCTACCTTGGTACAACCCCTCTGTTTTCGTTTAAAA
GACGGTTTGACC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGCTCCCCAGCGGGCAGCTCAGGCAGAG
TATCTGGAGTAAGAGGACAGGCATGAAGGGTGGTAAAGAGTCTGCCTGCT
ACATCTTTCCACTCATCCCCTAGGGAAGCAGCTGGGGAGGATAGAATTGA
GCCAGGAGTATCGGGAAGCCCACAAAAAGGGGGTACTGGGAAAAGCTATA
GCCACTCAGCTGCCTGTGTCACTGTGAAGACCAGAAAGCACTAGTCAAAA
CTGCAAGTGTTTATTCCAGTTTCTGATCCCCCTGCAAAAACTCTGACTCT
TGTGTGTATTGCTTACACCCCCCCCACAATTTTGTGAACACTGAGTGGTA
CTCAGATTGGCCCCCCCCACAGTATTATAGAACCATCCCAAACTGGGCAT
GGCCACACTTGCCTGTAAACCTAGCAGCTGGGAATCAGAGACAGAGGCCC
TTGGTTACCTAGATGGACCCTAGTCGACTCTAAGTAAATAAACCAAGAAA
TACAATCCAATTTCTATAGGCAGATCCTTTCTGAATAGATCGAATATAAA
CCACGCACTGGTTTTATCCCAGCTCCACCATTTTTTGTCTTTTATTCATG
CTTTCCCACCTCCACCCTTGTTTTTGTTCATTCCTCTTCTCCCCTTACCT
CCAACCCCTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_f10.b1 MSMg01no179_f10.b1 CHROMAT_FILE:
MSMg01no179_f10.b1 PHD_FILE: MSMg01no179_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:19 2005
         (234 letters)



>mm_chr8_125804868_125805501
          Length = 634

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtttgaggactgtgtggctgacctttggtggaagtccatgatctcgctgacaaggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtttgaggactgtgtggctgacctttggtggaagtccatgatctcgctgacaaggact 260

                                                                       
Query: 61  gtgcacgcctcttccaggactccaccacagccgcccaaagccgtcggagctggcaagtag 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcacgcctcttccaggtctccaccacagccgcccaaagccgtcggagctggcaagtag 320

                                                                       
Query: 121 cgctcatagattgcccattgatggaagtcatgtctgcaatggtggaaggccgaggtcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgctcatagattgcccattgatggaagtcatgtctgcaatggtggaaggccgaggtcaac 380

                                                              
Query: 181 actgagcaacactttgtaaccatcctgaagtggtctctctcagaagaacac 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgagcaacactttgtaaccatcctgaagtggtctctctcagaagaacac 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no179_f10.g1 MSMg01no179_f10.g1 CHROMAT_FILE:
MSMg01no179_f10.g1 PHD_FILE: MSMg01no179_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:20 2005
         (286 letters)



>mm_chr8_125972748_125973433
          Length = 686

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctccccagcgggcagctcaggcagagtatctggagtaagaggacaggcatgaagggt 60
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 485 aggctccccagcgggcagctcaggcaaagtgtctggagtaagaggacaggcatgaagggt 426

                                                                       
Query: 61  ggtaaagagtctgcctgctacatctttccactcatcccctagggaagcagctggggagga 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 425 ggtaaagagtctgcctgctacatctttccactcatcacctagggaagcagctggggagga 366

                                                                       
Query: 121 tagaattgagccaggagtatcgggaagcccacaaaaagggggtactgggaaaagctatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tagaattgagccaggagtatcgggaagcccacaaaaagggggtactgggaaaagctatag 306

                                                                       
Query: 181 ccactcagctgcctgtgtcactgtgaagaccagaaagcactagtcaaaactgcaagtgtt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccactcagctgcccgtgtcactgtgaagaccagaaagcactagtcaaaactgcaagtgtt 246

                                                        
Query: 241 tattccagtttctgatccccctgcaaaaactctgactcttgtgtg 285
           ||||||||||||||||||||||| ||||  |||||||||||||||
Sbjct: 245 tattccagtttctgatccccctgtaaaatgtctgactcttgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)