BAC Information

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BAC

Clone NameMSMg01-179N03
Chromosome8 (Build37)
Map Location 72,353,213 - 72,486,815
singlet/doubletdoublet
Overlap geneEdg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a
Upstream geneLpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip
Downstream geneLOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179N03.T7 (MSMg01no179_n03.b1)MSMg01-179N03.TJ (MSMg01no179_n03.g1)
ACCAG373483AG373484
length710722
length of high quality
(start - end)		510 (42 - 551)380 (70 - 449)
definitionCHROMAT_FILE: MSMg01no179_n03.b1 PHD_FILE: MSMg01no179_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:55 2005CHROMAT_FILE: MSMg01no179_n03.g1 PHD_FILE: MSMg01no179_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,353,213 - 72,353,716)(72,486,439 - 72,486,815)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGTCTTCACACTTGAGTAGCAAGCGCTTTAAAAAGTACTGAGCCATTG
CCCTAGCCTGGCTTTTCCTTGACTTCTCTGCTGTGTGACATCAAGCTTTT
GTCTCTTTTAGACCATTGGAACTTACAGTCTTCTCCCTCCCCCAGATCAG
GCCTGTGCAGTGCTGGGCCACTGTCTGACCTTTTGTACACTCTGGGCCCA
CCTTAAAGGCTTCTATTACTTCCTGTGGCTGGGGCCAAGCCTAGGGTTTT
CCTTGTGCTTACACATTTGAATTTCTTGCCAGGCACCCCCGGAAGTCTCC
ATCTTCCCCATGCCCCGTCGCCCCCATACACACATGCTGCTTGAGTTTCC
TCTTCAGTAAGAACAAAAGGCAGATGACTTGACTTCGCAGTCACACTGAC
CCTTCACCAAGCCTTCACCTGAATTCTGTCTCTGAGCAAACATTCAGGGA
GGCTCTGTATCTCTAGAGAGGGATTTGTGTGTGTGTGTGTGTGTGTGTGN
NCCTTCTTNTNTTTTTTTNTTTTAATTCTTTTTTTCTTGTGTGCGCTCTC
TCTCTTGGTGCTCTCCCGTCTCTGTTCGCTGTGCCGCCCTTCCTCTTCTC
TTGTCCCCATTCATTCACTACATCTTATTCATTAACATCTTTTATTTATA
TCCCCTAATT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGCAGGAGCAAATTCTGTAATCCTAACAT
TGACTATGGGGTGATGAGATGGAGACAGGAAAGACTCCTAGTTCACACAG
CCAGTTAGCCTCACTTCAGCAAGTTACAGGAGCTGCCTTGAGATGGAAGG
TGAAGACTGAAGTCATCTCTGACCTTCACATGCAAGACTTGGCACTTCTG
TGCCTATATTCACACACTTAGGCATCATTTATGTATACATATAGGAAAAT
TTCTCTGAAACATGTTATCTAGTAGCTTTTGTGATGGTTTCGTGAACTGC
CCAGATGGTTTTGAGTTTTAGCTCTTCTGGCGGACTTGAGAGGAAAGATG
GGTGTTCTTTCCAGGATCCTGGCTTGAAAGTGGGGAAGGGATGTGTCGGT
AGGTAGGATTCTTTTCGTATTTTTCCTTACTTTTTTTTCCTTTCTTTCAT
CGCATCCGGATTCTTTTTCTCCACCCTTATCATTGATATAACCACCATTA
TCTCTCTTTTTGCTTATATGTTTACCGTTATTTGTTCCCTACTATTATAT
CCCCTTATTTACCCTTCAACTCTACCCCTCATTCCCTTTTTTATTTTTTT
TTCCTCCCCTATTTACCCACCACTCATTTTTATCTCTTCCTCCCTTTCTC
TTCTCTCATTATTCCTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_n03.b1 MSMg01no179_n03.b1 CHROMAT_FILE:
MSMg01no179_n03.b1 PHD_FILE: MSMg01no179_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:55 2005
         (510 letters)



>mm_chr8_72353009_72353918
          Length = 910

 Score =  967 bits (500), Expect = 0.0
 Identities = 503/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggtcttcacacttgagtagcaagcgctttaaaaagtactgagccattgcccta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggtcttcaaacttgagtagcaagcgctttaaaaagtactgagccattgcccta 264

                                                                       
Query: 65  gcctggcttttccttgacttctctgctgtgtgacatcaagcttttgtctcttttagacca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcctggcttttccttgacttctctgctgtgtgacatcaagcttttgtctcttttagacca 324

                                                                       
Query: 125 ttggaacttacagtcttctccctcccccagatcaggcctgtgcagtgctgggccactgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggaacttacagtcttctccctcccccagatcaggcctgtgcagtgctgggccactgtc 384

                                                                       
Query: 185 tgaccttttgtacactctgggcccaccttaaaggcttctattacttcctgtggctggggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaccttttgtacactctgggcccaccttaaaggcttctattacttcctgtggctggggc 444

                                                                       
Query: 245 caagcctagggttttccttgtgcttacacatttgaatttcttgccaggcacccccggaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagcctagggttttccttgtgcttacacatttgaatttcttgccaggcacccccggaag 504

                                                                       
Query: 305 tctccatcttccccatgccccgtcgcccccatacacacatgctgcttgagtttcctcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctccatcttccccatgccccgtcgcccccatacacacatgctgcttgagtttcctcttc 564

                                                                       
Query: 365 agtaagaacaaaaggcagatgacttgacttcgcagtcacactgacccttcaccaagcctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtaagaacaaaaggcagatgacttgacttcgcagtcacactgacccttcaccaagcctt 624

                                                                       
Query: 425 cacctgaattctgtctctgagcaaacattcagggaggctctgtatctctagagagggatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacctgaattctgtctctgagcaaacattcagggaggctctgtatctctagagagggatt 684

                                   
Query: 485 tgtgtgtgtgtgtgtgtgtgtgtg 508
           ||||||||||||||||||||||||
Sbjct: 685 tgtgtgtgtgtgtgtgtgtgtgtg 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no179_n03.g1 MSMg01no179_n03.g1 CHROMAT_FILE:
MSMg01no179_n03.g1 PHD_FILE: MSMg01no179_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:55 2005
         (380 letters)



>mm_chr8_72486239_72487018
          Length = 780

 Score =  729 bits (377), Expect = 0.0
 Identities = 377/377 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcaggagcaaattctgtaatcctaacattgactatggggtgatgagatggagacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcagcaggagcaaattctgtaatcctaacattgactatggggtgatgagatggagacagg 518

                                                                       
Query: 61  aaagactcctagttcacacagccagttagcctcacttcagcaagttacaggagctgcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaagactcctagttcacacagccagttagcctcacttcagcaagttacaggagctgcctt 458

                                                                       
Query: 121 gagatggaaggtgaagactgaagtcatctctgaccttcacatgcaagacttggcacttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gagatggaaggtgaagactgaagtcatctctgaccttcacatgcaagacttggcacttct 398

                                                                       
Query: 181 gtgcctatattcacacacttaggcatcatttatgtatacatataggaaaatttctctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtgcctatattcacacacttaggcatcatttatgtatacatataggaaaatttctctgaa 338

                                                                       
Query: 241 acatgttatctagtagcttttgtgatggtttcgtgaactgcccagatggttttgagtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acatgttatctagtagcttttgtgatggtttcgtgaactgcccagatggttttgagtttt 278

                                                                       
Query: 301 agctcttctggcggacttgagaggaaagatgggtgttctttccaggatcctggcttgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agctcttctggcggacttgagaggaaagatgggtgttctttccaggatcctggcttgaaa 218

                            
Query: 361 gtggggaagggatgtgt 377
           |||||||||||||||||
Sbjct: 217 gtggggaagggatgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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