BAC Information

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BAC

Clone NameMSMg01-180B07
Chromosome8 (Build37)
Map Location 125,254,071 - 125,254,246
singlet/doubletsinglet
Overlap geneC230057M02Rik
Upstream geneJph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h
Downstream geneA530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180B07.T7 (MSMg01no180_b07.b1)MSMg01-180B07.TJ (MSMg01no180_b07.g1)
ACCAG373660AG373661
length783726
length of high quality
(start - end)
62 (41 - 102)349 (368 - 716)
definitionCHROMAT_FILE: MSMg01no180_b07.b1 PHD_FILE: MSMg01no180_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:14 2005CHROMAT_FILE: MSMg01no180_b07.g1 PHD_FILE: MSMg01no180_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
GTTCCCCAGAGTAAACACTGGTGGCATGTACCTCTGTTGGTTATTGGGAC
CTTAGGATGACACCTAGATGTGGGAGGGAGTTATATTTACTTCCCTCTTC
TACCTTTATCCTTTCATCTCCCATCAATTTGATTAACATGACACCCTTAT
AGCATTCTCTAACCCTGATCCTCCTGAATGAATATTCCTTCTCCCCTTCA
CCCAAATTCTCATCCCTATTTTTCTTTTTTCTTCCTCTCCCCCCCCCCCA
CCACAATTTTTTTTATTATATTTCCTCATTATTACCCCAACCCCATTTTT
TTTTTTCCCCCCCCCCACCCCCCCCCAAAAGAAATTAATAAAAATATATA
CGACCCCCCCCCCCTACAAAAAAAAAAAACATTACTTTTTTCCCCCCCTC
CCCCCCCCATTATCCTTTTTTTTTCCTTTCCCTCTCCCCCCCCCCTTTTT
TTTCTTTCACCTCCCCCCCCCTTCTCTCTATCTATCCCACTATCCCTCTT
TCCCCTATTTTTTTTAATACAACCTTCCTCCCCCCTTTTTTCTTTTTTTT
TTTTCTCCTCTTTCTCCCTCTTCTCCCCCTTTTTTTCCTCTTCCCTCCCC
TCCCCCTTCTTCCTTTTTCCCCTTTACTCACTCTCCCCCTTTTTTTTTCC
TTTTTCTCCCCCCCTCCCCCCCTCTTCCCCTTTTTTTTTTCACCCTTCCC
CCCCTCCCTTTTTCTCCCCCCCCCCCCCTTCTG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCAGTACCACGAGAAAGGAAAAGAAACAAAAGG
AAGGCCAGTCAGATGCCTCAGTGAGAAACGGTGCTTGCCGCCAAACCTGA
CAACCTAAGTGTGATTCCCCAAACTCACATGGTGGAAGGAGAGACGTGGC
CCCTGAAAGCTGTCCTCTGACCTCCACACACATGCTATGAATTTGAGCAT
ACATGCGTGTGAATACACACACACACACACACACACACACACACACCACT
TTTCAAAAATTGGGAGGAAATGAGGGATGGTTACACTAGGAGTAGACAGA
GTAGTCTGCACACGACAAATCCTAATAGAGTTGGAGAGGAACACACCAGT
TATGAACTCAGAAGAAGAGCCATGGGGCCTGCTCTTAAGAAGTTCAAAAC
AGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGCCCAA
GGCCCTGGGTTCGGTCCTCAGCTCCGGAAAAAAAAAAAAAAAGAAGTTCA
AAACACATGACACAAATCCAAAGGGAAACAGAGAAACTCATAGCCACCGT
TGGGAGTCCCAACATCCCCGTCAAATATAGAACCAGAAAAACCAGGAGAT
TGGGGAGAGTAGGGAGAAGACAGGAGCTTCAACCACCATGACCTCATTGA
TAGTGATAGGACCCTTCATCCAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_b07.g1 MSMg01no180_b07.g1 CHROMAT_FILE:
MSMg01no180_b07.g1 PHD_FILE: MSMg01no180_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:14 2005
         (349 letters)



>mm_chr8_125253650_125254398
          Length = 749

 Score =  333 bits (172), Expect = 1e-95
 Identities = 175/176 (99%)
 Strand = Plus / Minus

                                                                       
Query: 174 aagaagttcaaaacacatgacacaaatccaaagggaaacagagaaactcatagccaccgt 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aagaagttcaaaacacatgacacaaatccaaagggaaacagagaaactcatagccaccgt 538

                                                                       
Query: 234 tgggagtcccaacatccccgtcaaatatagaaccagaaaaaccaggagattggggagagt 293
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 537 tgggagtcccaacatccccgtcaaatatagaaccagaaaaaccaggaggttggggagagt 478

                                                                   
Query: 294 agggagaagacaggagcttcaaccaccatgacctcattgatagtgataggaccctt 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agggagaagacaggagcttcaaccaccatgacctcattgatagtgataggaccctt 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)