Query= MSMg01no181_a05.b1 MSMg01no181_a05.b1 CHROMAT_FILE:
MSMg01no181_a05.b1 PHD_FILE: MSMg01no181_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:23 2005
(625 letters)
>mm_chr8_115394711_115395735
Length = 1025
Score = 1102 bits (570), Expect = 0.0
Identities = 609/622 (97%), Gaps = 3/622 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtgaaaatccccaagctaatttaaaattgcagatattgaagggggattccccc 64
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 206 gaattctgtgaaaattcccaagctaatttaaaattgcagatattgaaggggg-ttccccc 264
Query: 65 ccccactctgtggggctggagaggttgctcagtggtgaagaatagttgcttctctcttca 124
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccg-actctgtggggctggagaggttgctcagtggtgaagaatagttgcttctctcttca 323
Query: 125 aggacctgagtttagttcccagcatccacactgggcagctcatagccacctgtaactcat 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtacctgagtttagttcccagcatccacactgggcagctcatagccacctgtaactcat 383
Query: 185 gttcacatatccacatgcagacacacacctacacataataaaagataataaaaa-taaat 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 gttcacatatccacatgcagacacacacctacacataataaaagataataaaaaataaat 443
Query: 244 atgttttaaaaagaaaaggatttactgatttactgtgtcctctgcagaatattgaaagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgttttaaaaagaaaaggatttactgatttactgtgtcctctgcagaatattgaaagaa 503
Query: 304 aataacccagagaaagcaaaagatagactcacagaagtatcagatacattgaaaggaaga 363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aataacccagggaaagcaaaagatagactcacagaagtatcagatacattgaaaggaaga 563
Query: 364 aatagagtctgatgtttagtagtgacctctacatataaaggggaaaacacccccatagaa 423
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 564 aatagagtctgatgtttagtagtgacctctacatataatggggaaaacaccctcatagaa 623
Query: 424 agaggcattactacagtcatcacaaaaggtaacccaatccctaatggacatacattcagt 483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agaggcactactacagtcatcacaaaaggtaacccaatccctaatggacatacattcagt 683
Query: 484 gaattgtccaggttacttactgcatggaacaccagtcgtttctattcccatatttactat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattgtccaggttacttactgcatggaacaccagtcgtttctattcccatatttactat 743
Query: 544 gtggtctctcactaaattgtatggtaccctaacagcaggggactcctttctcccttctta 603
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtggcctctcactgaagtgtatggtaccctaacagcaggggactcctttctcccttctta 803
Query: 604 gttctgacaacactaaacagta 625
||||||||||||||||||||||
Sbjct: 804 gttctgacaacactaaacagta 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_a05.g1 MSMg01no181_a05.g1 CHROMAT_FILE:
MSMg01no181_a05.g1 PHD_FILE: MSMg01no181_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:23 2005
(645 letters)
>mm_chr8_115504734_115505778
Length = 1045
Score = 1193 bits (617), Expect = 0.0
Identities = 635/641 (99%), Gaps = 1/641 (0%)
Strand = Plus / Minus
Query: 5 atgaatgtaaccagggtcagatagtggtggcccatgcctttaattccaacagttgagagt 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atgaatgtaaccagggtcagacagtggtggcccatgcctttaattccaacagttgagagt 615
Query: 65 taagaagcagatgtatctctgtgagtttgaggccagtctggtctacagagcaagtttcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taagaagcagatgtatctctgtgagtttgaggccagtctggtctacagagcaagtttcag 555
Query: 125 catagccagggataaacacaaaaccccaactcaagggggaaaaagggaaaaaaagaagga 184
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 554 catagccagggataaacacaaaaccccaactcaagggggaaaagggggaaaaaagaagga 495
Query: 185 aataaccattcttataaatagctgaagtttcaataaattagtctttttgtctgcagatct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aataaccattcttataaatagctgaagtttcaataaattagtctttttgtctgcagatct 435
Query: 245 attctttcccatctgaaattcagtttgagacattgccttcttttgacttttgactctgtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 attctttcccatctgaaattcagtttgagacattgccttcttttgacttttgactctgtc 375
Query: 305 accagggaattctgagtttaaaataatatttattgtataaattttttggtgtttagaatt 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 374 accagggaattctgagtttaaaataatatttattgtataaa-tttttggtgtttagaatt 316
Query: 365 cattctttataatataaaaggactaccttgtaatttttgatatagtgctctctcttctcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cattctttataatataaaaggactaccttgtaatttttgatatagtgctctctcttctcc 256
Query: 425 cctcctttgtctaaggcacacgtggaaagaatactataatatccaaagtatcagagtgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cctcctttgtctaaggcacacgtggaaagaatactataatatccaaagtatcagagtgtt 196
Query: 485 acagagactttttgttctgttcctggtgcaaagaaaattcaactgatctttatcagtctc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acagagactttttgttctgttcctggtgcaaagaaaattcaactgatctttatcagtctc 136
Query: 545 ttatgtgtttatatagatcaaaactatttctcagagcaaaacaatgggtttcaaaataaa 604
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 135 ttatgtgtttatatagatcaaaactatttctcagagcaaaacaatggatttcaaaataaa 76
Query: 605 aggcaacacaagctctccctgcctgtcacctacctgcaaca 645
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 75 aggcaacacaaactctccctgcctgtcacctacctgcaaca 35
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
