BAC Information

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BAC

Clone NameMSMg01-181C20
Chromosome8 (Build37)
Map Location 5,486,976 - 5,487,136
singlet/doubletsinglet
Overlap genenone
Upstream geneLass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181C20.T7 (MSMg01no181_c20.b1)MSMg01-181C20.TJ (MSMg01no181_c20.g1)
ACCAG374437AG374438
length733752
length of high quality
(start - end)
318 (41 - 358)247 (70 - 316)
definitionCHROMAT_FILE: MSMg01no181_c20.b1 PHD_FILE: MSMg01no181_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:35 2005CHROMAT_FILE: MSMg01no181_c20.g1 PHD_FILE: MSMg01no181_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGGAAATGGAGAGTTAGGCTTCATCTGCAAATTTATAGAGACACAAAAT
AATTTCTAGCACTTTGGGGAGATGGATAAGCTCTCAGCGCCAGAAGTCCC
CTAATGAAAGAATCAGAACAGAATGGCTGGCAAGTGACAGAGGAAGGATA
CTCTTTTTTTTTTCCATTTTTATTAGGTATTTAGATCATTTAATTTTCCA
ATGCTATACCAAAATCCCCCATACCCACCTACCCCCACTCCCCTACCCAC
CCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAG
TTTGCGTGTTTTTTGTTGCCTCCCCCCCCCCCGATGGCCGACTAGGCCAT
CTTTTGATACATATGCAGCTAGAGACAAAAGATCCGGGGTACTGGTTAGT
TCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGG
TTCTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTG
ACTGTGAGCATCGACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAA
GAGACAGCTGCATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAA
TGGTGTCGGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGATATGGCA
GTCTCTACATGGTCCATCCTTTCATCTCAGCTC
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGATTGG
GTGTTGGATCTTGTCAAATGCTTTCTCCTCATCTAACTAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATAATGGGTTATGTTGATGGATTTC
CATATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGG
ATGGATGATTGCTTTAATGTGTTATTGGGTTCAGTTAGCAAGAATTTTAT
TGAGTATTTTTTCATCGTTATTCATAAGGGAAATTGGTCTGAAGTTTTCT
ATCTTTGTTTTTTTTTTCCCCGGCAACCCCCCATAGAAATTATGGATTCA
TACAATGAGTCGCCCCCACTTCCAAAAAAAAAAATTTTGGGGGATAGGTT
GTGCAGAATATACTTACATCTTCTTTGACCTTCTGATAAAACTCTGCCCT
ATCTCTATCTGGATCTGTAATCTCTACGGCTTGTCATCCCCTATTGACCG
ATTCTATCTCTTCATGTTATCTGCTTTCTGTTTTTATTCTTACTTCTGCC
CTAGTTTTTTTTTTCTCCACTTTCTTTTTTGTTTTCTTCCTTTGCCCATT
TTTTTCTTCTTTACTTTTTTTACTCCCTCCTGTATACTTTCAATCCCCCC
TTTATTCCCCCCTCCTCCTCTATCTTTTTTATCCCCTTTTTTTCTTTTAT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_c20.b1 MSMg01no181_c20.b1 CHROMAT_FILE:
MSMg01no181_c20.b1 PHD_FILE: MSMg01no181_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:35 2005
         (318 letters)



>mm_chr8_5486772_5487489
          Length = 718

 Score =  304 bits (157), Expect = 6e-87
 Identities = 160/161 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagggaaatggagagttaggcttcatctgcaaatttatagagacacaaaataatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggaaatggagagttaggcttcatctgcaaatttatagagacacaaaataatt 264

                                                                       
Query: 65  tctagcactttggggagatggataagctctcagcgccagaagtcccctaatgaaagaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctagcactttggggagatggataagctctcagcgccagaagtcccctaatgaaagaatc 324

                                                    
Query: 125 agaacagaatggctggcaagtgacagaggaaggatactctt 165
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 agaacagaatggctggcaagtgacagaggaaggataatctt 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)