BAC Information

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BAC

Clone NameMSMg01-181D10
Chromosome8 (Build37)
Map Location 89,837,970 - 89,838,255
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
Downstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181D10.T7 (MSMg01no181_d10.b1)MSMg01-181D10.TJ (MSMg01no181_d10.g1)
ACCAG374462AG374463
length757733
length of high quality
(start - end)
290 (73 - 362)323 (43 - 365)
definitionCHROMAT_FILE: MSMg01no181_d10.b1 PHD_FILE: MSMg01no181_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:38 2005CHROMAT_FILE: MSMg01no181_d10.g1 PHD_FILE: MSMg01no181_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAATATTGGGGCATCATAGAGTTTAGGA
ACATCCCTAGAGATAAGATACCGCTGGTTAAGAGCCAAGTCAGACCCACT
TGATTTCACATCTTTGGCTCATCTGGGAAGTAAAGACCTTAAAATGTGAT
CTGGGGGCTAGAAAGATGGCTCGGTGGTTAAAAGCACTGGCTACTCTTCC
AGGGGACCTGGGTTCAACTCCCAGCACCCACATGGCAGCTCAAAACTGCT
TGTAACTACAGTTCTAGAGGATGCAATATCCTCACACAGACATGAATGCA
GGAAAAAACTTTTTTTATCACCACACCACTTTAAAAATGTGGTCTGGGGG
CTGGAAATACTACTCACTTGCCTATTATGAGGAAAAGAATGGCTTCAAAC
CTCAGCTAGCACCTGAGGGGGTAGAGTTCGAGGAGGGGTTGGTTGATTCT
TCCTTTTTCACTCTCTTCATTTTTTCCCTTTTTCCCCCCTTTTTTTTTTA
CCCCCCCCTTTTTTTTTATTTCCCTTTTTTTCCCCCCCCCCCTCTCCCCC
CTCTCCCTTTTTTTCCCCACCCCCCCCCCCCCCCCCTTTTTTTTTTTTTT
ATTACATATTCCTTCCCCCTTTTTTTTTTTTTCCTTTTTTTTCCCCCCCC
TCTCCCCCCCCCCCTCCTTCCTCTCTTATTTATTCTTCCGCTCCCCCCAT
TATCACN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGATACCTAGGAAGAACACTGCCTGCTAGCTCATTCCTTCTGGTCTGC
CCAGCTATCTTTTTTAGAGAGCCCAGGCTCACCTGCCTAGGGATGGTTCT
GCCCACAGTAGGCTTCCTATATCAATTAGCAATTAAGAAACTGCCTCACA
CATGACCGTAGGCCAATGAGGTCTAACCAGGTCCTCAACTGAGGTTTCAT
TTTCTCATGTGGTTCTGGGCTGTGTCAAGTTGACAGCTGAAGCTAACTAT
CATAACACCTTCTGATTATGGGATAGCAATCTGTCTTCTTTACCTTTCAC
CTTCTTTCTCTTTAATAACGCCCCTCGATTTTGGAGAAAGATAATGCATT
AAGATAGTTTTTTTCAATGGTACAAAATACTATATGATGAAAATATTCCT
GGTGTGAAGAACCACGCTGTTCTTATCTCCAGCCTCACCCACCATTACTG
TGCCGTCAGAGTATTTCAGAATTGATGCATACATGAGCATTTGTCTGCCT
CTACCACCATGGCTCCTTCTGCCTCCATCTTCCTATCTCTCCCTGGAACA
CAAATAAGATATGATCCATATTGCTTGCTCATTATTGCTCACAAATTATC
GATCTACTTGGAAGATCCTCCTTTTATTATTGTGTGTAACGCTGCCTCAT
CTTAAACACCTGTCGTGCTGTGAGGCCTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_d10.b1 MSMg01no181_d10.b1 CHROMAT_FILE:
MSMg01no181_d10.b1 PHD_FILE: MSMg01no181_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:38 2005
         (290 letters)



>mm_chr8_89837925_89838614
          Length = 690

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%), Gaps = 2/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatattggggcatcatagagtttaggaacatccctagagataagataccgctggttaag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 331 aaatattggggcatcatagagtttaggaacatccctagagacaagatactgctggttaag 272

                                                                       
Query: 61  agccaag-tcagacccacttgatttcacatctttggctcatctgggaagtaaagacctta 119
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agcc-agatcagacccacttgatttcacatctttggctcatctgggaagtaaagacctta 213

                                                                       
Query: 120 aaatgtgatctgggggctagaaagatggctcggtggttaaaagcactggctactcttcca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aaatgtgatctgggggctagaaagatggctcggtggttaaaagcactggctactcttcca 153

                                                                       
Query: 180 ggggacctgggttcaactcccagcacccacatggcagctcaaaactgcttgtaactacag 239
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 152 ggggacctgggttcaactcccagcacccacatggcagctcacaactgcttgtaactgcag 93

                                                          
Query: 240 ttctagaggatgcaatatcctcacacagacatgaatgcaggaaaaaa 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ttctagaggatgcaatatcctcacacagacatgaatgcaggaaaaaa 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)