BAC Information

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BAC

Clone NameMSMg01-181L04
Chromosome8 (Build37)
Map Location 19,712,010 - 19,712,183
singlet/doubletsinglet
Overlap genenone
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730
Downstream gene4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181L04.T7 (MSMg01no181_l04.b1)MSMg01-181L04.TJ (MSMg01no181_l04.g1)
ACCAG374798AG374799
length765766
length of high quality
(start - end)
216 (78 - 293)183 (48 - 230)
definitionCHROMAT_FILE: MSMg01no181_l04.b1 PHD_FILE: MSMg01no181_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:13 2005CHROMAT_FILE: MSMg01no181_l04.g1 PHD_FILE: MSMg01no181_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATTCAGGTCATAAGGACAGG
AGAGGACACATTTTGTCCTTTCTTTTTATGTCTTTCCATTTTGTAGAGAA
TGATGATGTGAGGTAGCAAAGAGCAGAAGATAAAAGCATAACACTAAGCA
GGTCCCCATCAAAGATTTCTAGATACTCTGGGCCTTTTACTCATCATGCA
GAAAGGAAGCAGAGGTTGCTAAATATCAGATAGTGTCCTTAGTGATGAAG
TTGGTCTGAATACAGAAACATTTTGGGGACTATATATTCAAGATTCTGAC
ATTATCCGACAGGTGATTTTTTTTTTTCCCCCCCCGAATTTTTATTTCAC
CAGTTCCATTGCCTATTTTCCCCATTTTTGCGAGTAAATAACCCATTTAT
TTTTCGCACCCTTCTTTTTTTTGCACATATTTTATGTGTTTGACGCTCCT
GGTCGACATAGACACCCTTCATTTTTCCACGTTCTGACCCACCTTTTTTC
TCGCCCCCCCCTTTTTTTTTTTATCCTTCTTTTTGCCCCCGCCCCCCCCC
GCCCCCTCCTCTTTTTTTTCCCCCCCCCCCCCCCCCCCCCCTTTTTTTTT
TTTTAAGACTATGATCACACCCGATATTTTTTCTCCTTTTTTTCTCCCCC
CCCCCCCCCCCCCCCCCCCCTATTGCACCACATTTCTTCTTTCCTCCCCC
CCTCTCTATACTATN
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGCTGTAAAACAATCCAGATGTTCTAAGATGATTTGGGGGG
GATGCCAAAAGGATGCCAGATTTTTACCCAGACCTGCCAAGTCTTGATGT
GTGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCACCCCCCC
GCCACTCCCCCTCCACCCCCCCAAAGCATGATATTCGTGAGAAAGGGAGG
AAGACAGATTTGTTTGGACAGATGAGCTGACCCTCCATGCTGTAGCCACT
GAGGTCTCATCCAGTTCTACAGGAGCTGTTTTGTCTCCAAACTGTGATGA
TGGTTTCCTTATTACTTTTTTGTTTCCCCCCCCCCCCCTATAGGATCTCT
TTTTATACAGTTGCTTGTCGTTTCCCCTCAGCTAAATATAGATGATTTAT
ACTCTCGATCTTCAATATTACCTTGCTGCTATCTTTTCTTCTTTTTTTTT
GTTTTTTTTCCAATACGCCCCCTCCACCCTTCCATTTCTTTTCTTTTCTC
TCTCACTTCCCTCTCCTGTTTATCGCTCCTTCCTTCTCTTTTTCTTTTCT
TCCTTTATCTTCTTTTTTCTTCCTTTTTTCCCCTCCCTCTTCCCTTTCTC
TTCTATCCCTCCCTTCGCTTATTATTTTCCCCCTCTCTATTCCTTTTTTT
TTCTCTTTTTTTACGCCCACCTTAATTTTTTCTCACTCCCCCCCCCATTT
CATTTTCCTTTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_l04.g1 MSMg01no181_l04.g1 CHROMAT_FILE:
MSMg01no181_l04.g1 PHD_FILE: MSMg01no181_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:13 2005
         (183 letters)



>mm_chr8_19711807_19712389
          Length = 583

 Score =  284 bits (147), Expect = 2e-81
 Identities = 168/175 (96%), Gaps = 2/175 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcagctgtaaaacaatccagatgttctaagatgatttgggggggatgccaaaa 63
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggaatcctcagctgtaaaagaatccagatgttctaagatgatttgggggggatgccaaaa 318

                                                                       
Query: 64  ggatgccagatttttacccagacctgccaagtcttgatgtgtgctccttaggaaccattc 123
           ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggacgccagatttttacaaagacctgccaagtcttgatgtgtgctccttaggaaccattc 258

                                                                  
Query: 124 tggaagagatgctgggaagtgcaccccc-ccgccactccccctccacccccccaa 177
           |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 257 tggaagagatgctgggaagtgc-ccccctccgccactccccctccacccccccaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)