BAC Information

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BAC

Clone NameMSMg01-181P16
Chromosome8 (Build37)
Map Location 49,856,945 - 50,006,669
singlet/doubletdoublet
Overlap gene2900073C17Rik
Upstream geneLOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
Downstream geneLOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181P16.T7 (MSMg01no181_p16.b1)MSMg01-181P16.TJ (MSMg01no181_p16.g1)
ACCAG374990AG374991
length773744
length of high quality
(start - end)		290 (76 - 365)413 (43 - 455)
definitionCHROMAT_FILE: MSMg01no181_p16.b1 PHD_FILE: MSMg01no181_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:35 2005CHROMAT_FILE: MSMg01no181_p16.g1 PHD_FILE: MSMg01no181_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,006,380 - 50,006,669)(49,856,945 - 49,857,353)
sequence
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCCCCCTTTTAACAACAAAGTAC
AGAGAAAAAGAATATGCTCAGCTAACTTCGTCTCCCTACTCCGTTTGATC
TGAAAGAACAATCAGATACGCCTGATTTCTGAAGAGTGTTCAGAATAGAG
GGATCTCGGATACCCCAGTGATAGCCATCATTGTCAACAGGAGGCATCTG
GGTACTGACACTGGCACCTGACAACGCTCAGATGCTCAACACTTTATCTT
TTCTTTCAAAATCGACTGCTGTGACTCCTCTTTATCCAACACGCTAGATG
ATAAGTGTTTAGAGGAGAAACGGATCCTGGAGGAGAATAAAGCAAGGACC
TCAGACACTGCCGACGACCGCACGAAGAAGCGATGTTTTAATGGGAAATC
GGAGAGGGGGCTGAGATGTGGACCCAAAGACAGAAATGCAATTGAGAGTT
GCCGATCGAAGAACGATAGAATGATAGTTTGACCGATTATGACCGATTGA
TTTACCGAACCACCGCATTATAGATTGAACGATTGTTTTAACCCACCGCC
CCACCCCCCTCTACTGTTTTGTTTTATCGCCCACGCCCACCCCCCCCTTT
TTTTTTTTTGGATTAATGCTTGATTACCTCACCCGTGTTTTTCCATATTA
TTATACACCCACCCCCCCCCACCACCTCTTATATCACTTTATAATTTATT
CCATATCTCACTTGTTAAATCCT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACATGATATCCCGTTTGAATCATGCTCATTTTCATTCCGCTAATGCTT
TAGTACCAAGGTGGTCGGTGGCTTGTTTGATGGAATGGACACCTGATACG
GAGCCAGAAAAGATCTATGATGACAGGCTTGAGGTACACCAGCACTGTCT
GTACACAGGGGCTCAATGCTTTGGAGTGGAGAACCAACCCCTCAGTTAGT
TCAACATTTATGGATCACCACCTACACATGACACACAGTGCTGGGGCTAG
GAATTCAACAGCAAATTATAAGGATGGTCTAAGTTTAGAATGATAGACTA
CACCTGTATTCCCTACACTAGGGAAGTTGAGTTCACGGTCACCCTGGGCT
ACACAACAAGACTACCTCAAGCAGGTGGGATGGGGAGTGTACCATTTTCT
CTTAATAACTCTAGTATAGAATGTCTAAAATACAACTGCAGTATTTATAT
TTTCCTCATCTTATAGAAGGTGTCCACTTCTTGTTACTAAGCATACAGTC
TATATCTTTCTTACCCGCTCCCTACTGTTGATGCTGTATTAATTAACCCC
TTTTTCCGCTTTTTTATTATCTTGTTTTTTCTCTTTATTCTTCTTGCTTA
CTCTTTTTTTTTTCCTCCCTTTCTCCTTTTTTTATTCTTATATCTCCCCC
CAATTTTTTTTTTCCCGCTTCCTATTACTCTCTTCTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_p16.b1 MSMg01no181_p16.b1 CHROMAT_FILE:
MSMg01no181_p16.b1 PHD_FILE: MSMg01no181_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:35 2005
         (290 letters)



>mm_chr8_50006180_50006869
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccccccttttaacaacaaagtacagagaaaaagaatatgctcagctaacttcgtctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctccccccttttaacaacaaagtacagagaaaaagaatatgctcagctaacttcgtctcc 431

                                                                       
Query: 61  ctactccgtttgatctgaaagaacaatcagatacgcctgatttctgaagagtgttcagaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 430 ctactccgtttgatctgaaagaacaatcagatacggctgatttctgaagagtgttcagaa 371

                                                                       
Query: 121 tagagggatctcggataccccagtgatagccatcattgtcaacaggaggcatctgggtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tagagggatctcggataccccagtgatagccatcattgtcaacaggaggcatctgggtac 311

                                                                       
Query: 181 tgacactggcacctgacaacgctcagatgctcaacactttatcttttctttcaaaatcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgacactggcacctgacaacgctcagatgctcaacactttatcttttctttcaaaatcga 251

                                                             
Query: 241 ctgctgtgactcctctttatccaacacgctagatgataagtgtttagagg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgctgtgactcctctttatccaacacgctagatgataagtgtttagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no181_p16.g1 MSMg01no181_p16.g1 CHROMAT_FILE:
MSMg01no181_p16.g1 PHD_FILE: MSMg01no181_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:35 2005
         (413 letters)



>mm_chr8_49856741_49857553
          Length = 813

 Score =  706 bits (365), Expect = 0.0
 Identities = 398/409 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatgatatcccgtttgaatcatgctcattttcattccgctaatgctttagtac 64
           |||||||||||| |  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatgagaaacagtttgaatcatgctcattttcattccgctaatgctttagtac 264

                                                                       
Query: 65  caaggtggtcggtggcttgtttgatggaatggacacctgatacggagccagaaaagatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggtggtcggtggcttgtttgatggaatggacacctgatacggagccagaaaagatct 324

                                                                       
Query: 125 atgatgacaggcttgaggtacaccagcactgtctgtacacaggggctcaatgctttggag 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgatgacaggcttaaggtacaccagcactgtctgtacacaggggctcaatgctttggag 384

                                                                       
Query: 185 tggagaaccaacccctcagttagttcaacatttatggatcaccacctacacatgacacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggagaaccaacccctcagttagttcaacatttatggatcaccacctacacatgacacac 444

                                                                       
Query: 245 agtgctggggctaggaattcaacagcaaattataaggatggtctaagtttagaatgatag 304
           |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 445 agtgctggggctaggaattcaacagcaagttagaagggtggtctaagtttagaatgatag 504

                                                                       
Query: 305 actacacctgtattccctacactagggaagttgagttcacggtcaccctgggctacacaa 364
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actacgcctgtattccctaaactagggaagttgagttcacggtcaccctgggctacacaa 564

                                                            
Query: 365 caagactacctcaagcaggtgggatggggagtgtaccattttctcttaa 413
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caagactatctcaagcaggtgggatggggagtgtaccattttctcttaa 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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