BAC Information

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BAC

Clone NameMSMg01-182J08
Chromosome8 (Build37)
Map Location 58,974,337 - 58,974,568
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948
Downstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182J08.T7 (MSMg01no182_j08.b1)MSMg01-182J08.TJ (MSMg01no182_j08.g1)
ACCAG375422AG375423
length792746
length of high quality
(start - end)
234 (72 - 305)316 (46 - 361)
definitionCHROMAT_FILE: MSMg01no182_j08.b1 PHD_FILE: MSMg01no182_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:22 2005CHROMAT_FILE: MSMg01no182_j08.g1 PHD_FILE: MSMg01no182_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGTTTTAGTGGCATTTTCATATATATA
GATATATTTGGTTTTGTTTGCACCTCCTGCCTCTGGGTTTTCTATTTTTT
TTTCCAAATATGATTTTAATTTAAATAGAATTACATCACTTTCCACTTCT
CTTCATCTCTTCCCAACTATTCTCCTTCAAACCAAACCCACACCCCTCCA
TTCTTAATTAGCCCCTTTATATTTTATGTACATTGCGATGGTTTGAATAT
GTTTGCCCTTGTTTTTCGCTCTATTCCTCGTACGTCCCCTTGTTGCTATA
CGTGCGCTTTTTTTTTTTCCACCTTTTCTTTCGCCCTTTTTTCCTTTTTT
ACCCCTTTTTTTTTTTCCCCCCCAATCAATTTATTTTTTTTACTATTCCT
TCTTTCCTCATTCCTCCTATTTCCTCTTTTTTTCCCTTCTCCTCCTTTCC
CTCTTTCGATATTCTGTTCTCCCTTCCTAATTTTCTCCTTTATTATCTTT
TTACATCATTCCCCCCCTTCTCCTTTTTCCTTTTTTTTTTCCCCTTCCCC
TCTTACCTTTTTCTTTCCCTCCCCCTATCTCTTCTATCACTCGCTTTCAT
CCCTTATCTCCTCTTTTCACCATTTCTACTACCCCTCTCTCTCCATTTTC
ACCTCCTTTCTTCCTACTCCCTCTTTTATTTTTTTTCCTTTTTCTTCCAC
CCCTCTTTTTTTTTTTTACACCTTTCCTTTCCCCTCTCTTCN
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTCGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACATACCATTGCTGTTT
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATTATTTTCCCCGCCTCTGCCTTTATGTGAAGTTCTTTGAT
CCACTTAGATTCCCCCCCACTACAAATATATTATCATGTATCGATTCGCA
TTCTTCTATTTGATTACCACATTTTGTTCCCGCACCTATTGTTTTATATG
CTGTCAATCTTACACTGTACGTCTTTCCCCTCCCTTGTTTTATACCCCGT
TGATCCTTACCGTTGTTTTTTTTTCCCTCTGTTTTTTTCCCCCCCTTTTC
TCACTTCTCTTTTTCTTCCTCCCTATTTTTTTTTTTTACTCCTCCTTTAT
TTTTTTCTATTCTATTATTTATTTTGATAGCTTCCTCCTCTTCTCCCCAC
AACATTTATCGATATTACTCTTCCATCCGTTCGTTATCATCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_j08.b1 MSMg01no182_j08.b1 CHROMAT_FILE:
MSMg01no182_j08.b1 PHD_FILE: MSMg01no182_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:22 2005
         (234 letters)



>mm_chr8_58974137_58974768
          Length = 632

 Score =  414 bits (214), Expect = e-120
 Identities = 229/234 (97%), Gaps = 2/234 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgttttagtggcattttcatatatatagatatatttggttttgtttgcacctcctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 432 agtgttttagtggcattttcatatatatagatatatttggttttggttg-acctcctgcc 374

                                                                       
Query: 61  tctgggttttctatttttttttccaaatatgattttaatttaaatagaattacatcactt 120
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 373 tctgggttttcta-ttttttttccaaatatgattttaattgaaatagaattacatcactt 315

                                                                       
Query: 121 tccacttctcttcatctcttcccaactattctccttcaaaccaaacccacacccctccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tccacttctcttcatctcttcccaactattctccttcaaaccaaacccacacccctccat 255

                                                                 
Query: 181 tcttaattagcccctttatattttatgtacattgcgatggtttgaatatgtttg 234
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 254 tcttaattagcccctttatattttatgtacattgtgatggtttgaatatgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 632
Length adjustment: 9
Effective length of query: 225
Effective length of database: 623
Effective search space:   140175
Effective search space used:   140175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)