BAC Information

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BAC

Clone NameMSMg01-183E08
Chromosome8 (Build37)
Map Location 53,809,461 - 53,809,783
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183E08.T7 (MSMg01no183_e08.b1)MSMg01-183E08.TJ (MSMg01no183_e08.g1)
ACCAG375916AG375917
length727736
length of high quality
(start - end)
327 (47 - 373)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no183_e08.b1 PHD_FILE: MSMg01no183_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:14 2005CHROMAT_FILE: MSMg01no183_e08.g1 PHD_FILE: MSMg01no183_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTTGTTCCCATAACTCATTTACTTTGCCAGTGACTGGGATGAG
AGATATGATATTGTTGATTTTCTCCACAGCAAAGAAAGAGAACACTCTGA
AATTATGAAAGATACTGGAACTGAGTAGTCTAGAATAGAGAAGTTATACA
TCAGAAGGGGAAAGGAAAAGCATTCTGCTGTAAAGAGACTAATAGAAAAA
TCTTTAAACTATCAAAGTCCAAAGGCAACGGATTGTATCTTGGTCTAGAC
TTGCACATCAGGGGTTTTCCCCTTTTAAAATTTATTTGAATTGGTCTGAA
TTTTATAAATAAGCTGATGGGCCATTTTAGAGTCAATATGCTTTTCATTA
TATATTTCTTTGTATGTCCTACTGTTACTGATTACATAGAGATTGTCATT
TTATATGAAACAATTTGTTAAATTGTCTATTTCAAATACATTATATTGTT
GTAACTCACTGTCAAAACATCATGGGGCATATTTTGTGAATTTTCTCTGT
TTTTTTATTTGCTCCATTGTTCTGTATGCCCTTCCATCATTTCGTATTAT
ATAAATAAAATTCTGCCCCCTATGCATGATTAAAATATCTTGGAACATGT
TCCATTATACCCTATTGCTACAAACCTCTCCTAGAATGTGAGGGAAGTTT
ATTGTCTTTAGCCCTTATTAGGCTTAN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAATGGTGGTAA
TGAAGTGTTCCCACAACACACACTGTTGAGAAGGATTCAACTGCGTGAAT
TCAGAACTCTTTAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTACAA
GGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGA
AGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTA
ACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAA
GGTATGTTTGTTTTTGAACTTTTCCCACGCGCTAGGAGCCTTTTTGTTCC
TTTTCACATGTTATCAAGCGGTTAAGGAAAGCTGAAAATTCTGGATGAAA
TTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAG
AGGACATATGGTTCACAAAATAAGTATACAGGCCTTTCCACGGGTCTTGA
ACCCGAGGACAAGTTTAGGTCAGGTAAGAACACCTGGGGAGAGATTAGAA
GGAAGTTAAAGAAACCAGATCCTTTACCGGAGGTCTCTAGGATAATGACC
CTACTACCCTCCCCTATATGATTTCCAGGAATCCTGGTCCTTATTTTTTC
TGACCCCCACGATTATGGCTTTAATTGTCCCGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_e08.b1 MSMg01no183_e08.b1 CHROMAT_FILE:
MSMg01no183_e08.b1 PHD_FILE: MSMg01no183_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:14 2005
         (327 letters)



>mm_chr8_53809257_53809983
          Length = 727

 Score =  571 bits (295), Expect = e-167
 Identities = 316/323 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttgttcccataactcatttactttgccagtgactgggatgagagatatgata 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgttgttcctataactcatttactttgccagtgactgggatgagagatatgata 264

                                                                       
Query: 65  ttgttgattttctccacagcaaagaaagagaacactctgaaattatgaaagatactggaa 124
           ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 265 ttgttgattttcttcacagcaaagaaagagaacactctgaaaatatgaaagacactggaa 324

                                                                       
Query: 125 ctgagtagtctagaatagagaagttatacatcagaaggggaaaggaaaagcattctgctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgagtagtctagaatagagaagttatacatcagaaggggaaaggaaaagcattctgctg 384

                                                                       
Query: 185 taaagagactaatagaaaaatctttaaactatcaaagtccaaaggcaacggattgtatct 244
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 385 taaagagactaatagaaaaatctttaaactatcaaagtccaaagacaaaggattgtatct 444

                                                                       
Query: 245 tggtctagacttgcacatcaggggttttccccttttaaaatttatttgaattggtctgaa 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 tggtctagacttgcacatcaggggttttccccttttaaaatttgtttgaattggtctgaa 504

                                  
Query: 305 ttttataaataagctgatgggcc 327
           |||||||||||||||||||||||
Sbjct: 505 ttttataaataagctgatgggcc 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)