BAC Information

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BAC

Clone NameMSMg01-183J17
Chromosome8 (Build37)
Map Location 62,667,712 - 62,667,990
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183J17.T7 (MSMg01no183_j17.b1)MSMg01-183J17.TJ (MSMg01no183_j17.g1)
ACCAG376144AG376145
length6971,038
length of high quality
(start - end)
279 (382 - 660)---
definitionCHROMAT_FILE: MSMg01no183_j17.b1 PHD_FILE: MSMg01no183_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:40 2005CHROMAT_FILE: MSMg01no183_j17.g1 PHD_FILE: MSMg01no183_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAACTTTGCAGAGAAAGTTTCAACAATACAAATGGCAGTGTAAA
ATTAGAAAAAAAAAACATTCCTGCCTCATTCAGGTTCATAGCTAGCATTG
TTTTAAAAAGACAGATCTCAGTTGGAAGAGTTCATTACTTAATTTAAATT
CCCCATTTTCTAACTTTGGTGTCAGCAGCCTTCAGTTGCAACATTTAATG
CAAATGTTGACTTATGCTGAGGTTACCCAAAGTTTGTAGAATGTTATTTT
TATAAGTGGTCTTTTGATTATTCTTCTTGAGTTTGTGAATATTTATGATT
GACATATTTCAGTATTATCTGTCCAGTAATGAGTAAGCGCATGGAAATTT
AGAGAGCTTTGGGAGTTATCAACATTAGCCTTGCAGAATAGATTTTAGAA
AACAGAATTCTCTTAATATAATGGACTTGAAAATTGGCACCATATATAAA
AATTGAGAATGTTCTGGGCCAAATATAAGGATAAGAACTATTTCAGAAAC
TTATCACCATATATCTTATATAAATACCAGTGAAATTTCTTAATCATAAT
TTGGCTAAACTGAAAAGGGAATAGCCAAAGGAAGAAGATAAATGAAACAA
AATTTTAAGAAAATTTTGGCTATATGTTTATTTATTTTACAAATATN
GGAAAGAGAGGGATAGAAGAAGGGAAGGTAAGTTCCCAAAAGATGGTGCG
GGTAAGGGGGCATTAACTATCTCCCAAACAAGAGGGAGATATGCAAGGAT
TCGACACTAGCTATACGCGNGACACGACGCAGANATAATTTTTTTTGCCC
CGACAAAAAAGGAGNGAGGNNGAAATGTGTGATGTGGGGCCGCGGGATTG
GTTTGGGGTTGGGTGTGTATTTTGGATAAATTACTCACCGTGTGTGGAAT
AGAACCCGGGTCCTTGCTACCTAATAGCCGAACATAATGCGAAAGAAACG
TAATAAGCAAAAAGAAATTATATATTGTTGGGAGAGAGCACCCGGGGGGC
GAGAGCAAATTTATTAATTAGCATGTGTCCTGGGCGACTATAATAATGCC
GGGGCTTTTGTTAGCGACACATAAATAAGAAGCAAAGAACCCAATAGAAA
AGAGGTGTTTATTTTTTTTTCGCCCCTCCTCCCCACCTTTTGTTGGGAGG
AGGGAAAACACAATGGAGCACGGACGACTGGGGTGCCCCCCCACAAAAAA
AAAAAAAAAAATAAGGGAGGGGGGAGGCGTGGTGGAGGGGCAGCGCCCTC
GTACCGCCACACCTGGACGTATTAGACAAGCCAAGACGGCGCGATTAGCC
CTCGCCATATATATCGACCGTATAAGGAGAGATGTGGGTGTGGATGGAAG
GAGAGATAAGGAGTTGTGGGACGAGTGTTTTTATCCGGCGGGGGGCGAGC
GGGCGGAGTCACTGGTTTCAGATTTTTCATCGACGGTGTGAGAATATTGT
TAACAAATGCGCCGTGCCGCTGATCATGCGCTGCACAAAGTATGGGTATG
CAATCGGCGGGAGCCCGGCCTTAGTCAGCATAGCTCGCGCTGATAAGCGC
GGTATCCTCGCTAACTCCTCGCGAGACGTGTACGATACTGTCTCCCCGCA
TTTGTGACCCCGCTAAGCCCGCTGTATGTATGCATGTGGTTCCCACGATG
TGGAGCCCAGAGTAATACAACAGCTCGCGGAGTGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_j17.b1 MSMg01no183_j17.b1 CHROMAT_FILE:
MSMg01no183_j17.b1 PHD_FILE: MSMg01no183_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:40 2005
         (279 letters)



>mm_chr8_62667512_62668190
          Length = 679

 Score =  532 bits (275), Expect = e-155
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaagcgcatggaaatttagagagctttgggagttatcaacattagccttgcagaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 479 agtaagcgcatggaaatttagagagctttgggagttatcaacattagccttgcagaacag 420

                                                                       
Query: 61  attttagaaaacagaattctcttaatataatggacttgaaaattggcaccatatataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 attttagaaaacagaattctcttaatataatggacttgaaaattggcaccatatataaaa 360

                                                                       
Query: 121 attgagaatgttctgggccaaatataaggataagaactatttcagaaacttatcaccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attgagaatgttctgggccaaatataaggataagaactatttcagaaacttatcaccata 300

                                                                       
Query: 181 tatcttatataaataccagtgaaatttcttaatcataatttggctaaactgaaaagggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tatcttatataaataccagtgaaatttcttaatcataatttggctaaactgaaaagggaa 240

                                                  
Query: 241 tagccaaaggaagaagataaatgaaacaaaattttaaga 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tagccaaaggaagaagataaatgaaacaaaattttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)