Query= MSMg01no184_m19.b1 MSMg01no184_m19.b1 CHROMAT_FILE:
MSMg01no184_m19.b1 PHD_FILE: MSMg01no184_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:19 2005
(422 letters)
>mm_chr8_128135583_128136405
Length = 823
Score = 739 bits (382), Expect = 0.0
Identities = 400/406 (98%), Gaps = 3/406 (0%)
Strand = Plus / Minus
Query: 16 gaattcccttct-ccaggtgttcaggcaacacgtccttccttctgcgttctctttttcca 74
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattcccttctcccaggtgttcaggcaacacgtccttccttctgcgttctctttttcca 561
Query: 75 caccgagttaggaccggagagatggaatgtaaccaacctgacacgctgtccatttaggag 134
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 caccgagttaggaccggagagatggaatgtaaccaaccggacacgctgtccatttaggag 501
Query: 135 tgagatctcctattttcttagaaacagtggtggaaaaagccaagcgactccaaagagagc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgagatctcctattttcttagaaacagtggtggaaaaagccaagcgactccaaagagagc 441
Query: 195 gatttcctagatgattctgatttatctggagccagaaaatcgaagacaagtataaaaggc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatttcctagatgattctgatttatctggagccagaaaatcgaagacaagtataaaaggc 381
Query: 255 aga-tttttttttttatcatgcccttacctaaaagctggattgtgtttagaatgtgcaaa 313
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 agattttttttttttatcatgcccttacctaaaagctggattgtgtttagaacgtgcaaa 321
Query: 314 ttggaagcagattgaatagaggctgctgcttggggctctggctttttgaagtatcgaatt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttggaagcagattgaatagaggctgctgcttggggctctggctttttgaagtatcgaa-g 262
Query: 374 aggctcagacatgagccagtttgcctgcactgagcaggcttatcag 419
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctcagacatgagccagtttgcctgcactgagcaggcttatcag 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space: 336182
Effective search space used: 336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_m19.g1 MSMg01no184_m19.g1 CHROMAT_FILE:
MSMg01no184_m19.g1 PHD_FILE: MSMg01no184_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:20 2005
(275 letters)
>mm_chr8_127999137_127999811
Length = 675
Score = 509 bits (263), Expect = e-149
Identities = 269/271 (99%)
Strand = Plus / Plus
Query: 5 gaggactgcaattcgtgtgtgtgcatagaaaatgttttgtttccaccaaagtaagtttgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaggactgcaattcgtgtgtgtgcatagaaaatgttttgtttccaccaaagtaagtttgg 264
Query: 65 ttgtacaattacagtcatttcttacatttttgactattttaaaaagaaaacattggctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtacaattacagtcatttcttacatttttgactattttaaaaagaaaacattggctgt 324
Query: 125 agacacgacacctcaggaggagctgcagcagcaactgaacagtccctgccgccactctac 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 agacacgacacctcaggaggagctgcagcagcaactgaacagtccctgctgccactctac 384
Query: 185 ctcagagtccaggttgtgctgaggtgggagctacagctttcctccagaaccagagggaga 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ctcagagtccaggttgtgctgaggtgggagccacagctttcctccagaaccagagggaga 444
Query: 245 ctagcttcagaaaatgagcttcagcaattgc 275
|||||||||||||||||||||||||||||||
Sbjct: 445 ctagcttcagaaaatgagcttcagcaattgc 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
