BAC Information

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BAC

Clone NameMSMg01-185C08
Chromosome8 (Build37)
Map Location 12,037,593 - 12,201,304
singlet/doubletdoublet
Overlap genenone
Upstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
Downstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185C08.T7 (MSMg01no185_c08.b1)MSMg01-185C08.TJ (MSMg01no185_c08.g1)
ACCAG377225AG377226
length782737
length of high quality
(start - end)		307 (101 - 407)640 (93 - 732)
definitionCHROMAT_FILE: MSMg01no185_c08.b1 PHD_FILE: MSMg01no185_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:47 2005CHROMAT_FILE: MSMg01no185_c08.g1 PHD_FILE: MSMg01no185_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,037,593 - 12,037,898)(12,200,666 - 12,201,304)
sequence
CTTCCTTTCTTTTTTTTTTCTCTCCGTTTGTTTTTTTTAAATTTATNCCA
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGATTCAGATATACTGGCTGGCCACTGAGCCCCATGGATCTGT
CTTTAAAAAGCAAAACAAAACAAAACAACCCCCCCCCCCAAAAAAAACAA
AACAAAACAAAACAAAAAAAACCATGGCTCTGAGCAATCTAACTCAATTG
TTCACGCTTATAGGCAACTATTTACTAACCAAACTCTCTGTGGCCCAAGA
ATCCTTTTCTCTTGACAGTAATTGTTCCAGGAACACCAGGGTGACAAAAT
GCAGGCCAGTGTATTAGAACTGGGACATGGCCAGAAGGAGATTCTGAAAG
TGTGCATTTTTTTTATCTTCACCCCCCCCCTTCAGACTCTGCGCCTGGAA
GCAGCCTCTGGTTTGCCCACGTACAAAAATAAAAATGAAGCTGGATGGGA
GAACCGTGCAAATGAAAACCCTAAAAGCTTGCACNCACAGGANCACGCAA
AGCTGCTAAAAAACACCACTGAGTGCCCCAAGTGATTGNCGCCTGCTGAC
ATCTAACAAGTCAGCCTGTGGCTTCCATCATGCTGTCTGTTTGCCGATGC
TATAGGGGGTGCAAACCCTTTTCCGGGTATTCATATTTAACTCCTACAAC
TTATTTTATTATCCAACATATAAGATATTCCCTGCCTCCTAATTTCCTAA
TACTCCTTCCATATCTTTACCCTAACCTCCCC

NTTCTCTTNNNNNTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCAAA
GCCTGGGCACTAAGTCCATCTTCATTGAAAGTCTGAGTGACACCAGACCT
TGAGGCTCTCTAGTGACAAGCTCCCAGTCCTGGAGATGAGTCCATAGGGG
AAGACAACCCAATTCCAATTAGGAATAATTGAGAGAGAGAGAACATCTCA
GCACAGTCATTGAGCACCTGGGAAGTAATGGGGTCACTCCGGATCCTTGA
GACGAAGTTTGAGCACATTCATGAGGGGAAGGAAGCCCATTTGCTTCTCG
CATTGTTCCTGCTGGGAAGAATTATTTATTCGCATTTGAACAGCCACAAG
GTCAAGACAATGATTATTTTCTGGGAAATCAATAAACTTCTCAATGCACT
TACAGCCGCTGCAAGCAATCCAATCACCAGCCCTATGCAATGATTCATCT
GGTGGTTGTGTCCTAAACGACGAGGCTTTCCAGGGCACAAAGCCACTGTG
AGATGCAGACACGATGGTCTTGACATCCAAGCTAATTCCCCAGCTCTGTG
AGTGAAGCCTTTCTGGAGTCCCTCACAGCTTACAGGCATAAATAATATTC
AAGGTAGAGAAGCTTCGCTCTCCTCTCTCTGCCTGCCCTGCTTCACACTG
TGGTGTATAGTATGCTCGCTCACACATGAGGATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_c08.b1 MSMg01no185_c08.b1 CHROMAT_FILE:
MSMg01no185_c08.b1 PHD_FILE: MSMg01no185_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:47 2005
         (307 letters)



>mm_chr8_12037393_12038099
          Length = 707

 Score =  592 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcactgattcagatatactggctggccactgagccccatggatctgtctttaaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcactgattcagatatactggctggccactgagccccatggatctgtctttaaaaag 260

                                                                       
Query: 61  caaaacaaaacaaaacaacccccccccccaaaaaaaacaaaacaaaacaaaacaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaacaaaacaaaacaacccccccccccaaaaaaaacaaaacaaaacaaaacaaaaaaa 320

                                                                       
Query: 121 accatggctctgagcaatctaactcaattgttcacgcttataggcaactatttactaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatggctctgagcaatctaactcaattgttcacgcttataggcaactatttactaacc 380

                                                                       
Query: 181 aaactctctgtggcccaagaatccttttctcttgacagtaattgttccaggaacaccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactctctgtggcccaagaatccttttctcttgacagtaattgttccaggaacaccagg 440

                                                                       
Query: 241 gtgacaaaatgcaggccagtgtattagaactgggacatggccagaaggagattctgaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgacaaaatgcaggccagtgtattagaactgggacatggccagaaggagattctgaaag 500

                 
Query: 301 tgtgca 306
           ||||||
Sbjct: 501 tgtgca 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_c08.g1 MSMg01no185_c08.g1 CHROMAT_FILE:
MSMg01no185_c08.g1 PHD_FILE: MSMg01no185_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:47 2005
         (640 letters)



>mm_chr8_12200465_12201504
          Length = 1040

 Score = 1205 bits (623), Expect = 0.0
 Identities = 635/639 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   cctcaaagcctgggcactaagtccatcttcattgaaagtctgagtgacaccagaccttga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 840 cctcaaagcctgggcactaagtccatcttcattgaaagtctgagtgacaccaggccttga 781

                                                                       
Query: 62  ggctctctagtgacaagctcccagtcctggagatgagtccataggggaagacaacccaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggctctctagtgacaagctcccagtcctggagatgagtccataggggaagacaacccaat 721

                                                                       
Query: 122 tccaattaggaataattgagagagagagaacatctcagcacagtcattgagcacctggga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tccaattaggaataattgagagagagagaacatctcagcacagtcattgagcacctggga 661

                                                                       
Query: 182 agtaatggggtcactccggatccttgagacgaagtttgagcacattcatgaggggaagga 241
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 660 agtaatggggtcactccggatccttgcgacgaagtttgagcacattcatgaggggaagga 601

                                                                       
Query: 242 agcccatttgcttctcgcattgttcctgctgggaagaattatttattcgcatttgaacag 301
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 600 agcccatttgcttctcgcattgttcctgctgggaagaattatttaatcgcatttgaacag 541

                                                                       
Query: 302 ccacaaggtcaagacaatgattattttctgggaaatcaataaacttctcaatgcacttac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ccacaaggtcaagacaatgattattttctgggaaatcaataaacttctcaatgcacttac 481

                                                                       
Query: 362 agccgctgcaagcaatccaatcaccagccctatgcaatgattcatctggtggttgtgtcc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agccgctgcaagcaatccaatcaccagccctatgcaatgattcatctggtggttgtgtcc 421

                                                                       
Query: 422 taaacgacgaggctttccagggcacaaagccactgtgagatgcagacacgatggtcttga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taaacgacgaggctttccagggcacaaagccactgtgagatgcagacacgatggtcttga 361

                                                                       
Query: 482 catccaagctaattccccagctctgtgagtgaagcctttctggagtccctcacagcttac 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 catccaagctaattccccagctctgtgagtgaagcctttctggagtccctcacagcttac 301

                                                                       
Query: 542 aggcataaataatattcaaggtagagaagcttcgctctcctctctctgcctgccctgctt 601
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 300 aggcataaataatattcaaggtagagaagcttcactctcctctctctgcctgccctgctt 241

                                                  
Query: 602 cacactgtggtgtatagtatgctcgctcacacatgagga 640
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cacactgtggtgtatagtatgctcgctcacacatgagga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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